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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37188750	G-A	HET
SBS	Chr1	40935786	G-A	HET
SBS	Chr1	7190865	C-T	HET
SBS	Chr10	21129320	A-G	HET	STOP_LOST	LOC_Os10g39540
SBS	Chr11	18279132	G-A	HET
SBS	Chr11	18279133	C-A	HET
SBS	Chr11	20844275	C-T	HET
SBS	Chr12	12828030	G-A	Homo
SBS	Chr12	21594506	T-A	Homo
SBS	Chr2	26691847	A-G	HET
SBS	Chr2	4831052	T-A	HET
SBS	Chr2	7007985	T-A	HET
SBS	Chr2	7742571	A-C	HET
SBS	Chr2	8101667	A-G	HET
SBS	Chr5	13437287	A-G	HET
SBS	Chr5	17193049	T-A	HET
SBS	Chr5	19225272	A-C	Homo
SBS	Chr5	19225274	G-A	Homo
SBS	Chr5	20625711	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g34760
SBS	Chr5	5857920	A-T	HET
SBS	Chr6	12344163	A-G	Homo
SBS	Chr6	21431761	C-T	HET
SBS	Chr6	30008931	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g49550
SBS	Chr6	30025252	C-A	Homo
SBS	Chr6	30025268	G-A	Homo
SBS	Chr6	4586033	G-A	Homo
SBS	Chr6	4586036	C-T	Homo
SBS	Chr6	608731	G-A	HET
SBS	Chr6	8862238	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15640
SBS	Chr7	2738218	C-T	HET
SBS	Chr8	13741481	G-A	Homo
SBS	Chr8	14031261	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g23240
SBS	Chr8	1445	G-A	HET
SBS	Chr8	15493144	G-A	HET
SBS	Chr8	17201778	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g28180
SBS	Chr9	17508980	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g28830
SBS	Chr9	19900906	A-C	Homo
SBS	Chr9	4940294	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09220
SBS	Chr9	8889608	G-A	Homo

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	197921	197922	1
Deletion	Chr6	835631	835639	8
Deletion	Chr6	8260048	8260051	3
Deletion	Chr3	10136359	10136363	4
Deletion	Chr6	10902881	10902896	15
Deletion	Chr5	11780001	11845000	64999	9
Deletion	Chr5	11849001	12020000	170999	26
Deletion	Chr5	12030001	12061000	30999	5
Deletion	Chr5	12064001	12131000	66999	12
Deletion	Chr7	12384966	12384967	1	LOC_Os07g22180
Deletion	Chr11	15767090	15767095	5
Deletion	Chr3	17062523	17062525	2	LOC_Os03g29940
Deletion	Chr12	19119113	19119117	4
Deletion	Chr12	20241095	20241101	6
Deletion	Chr11	20778996	20779001	5
Deletion	Chr4	27830784	27830785	1
Deletion	Chr3	27909693	27909702	9	LOC_Os03g49000
Deletion	Chr1	33473193	33473196	3
Deletion	Chr4	34002836	34002842	6
Deletion	Chr4	34573336	34573337	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	37535992	37535994	3
Insertion	Chr12	4233833	4233838	6
Insertion	Chr7	1662857	1662860	4

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4506831	4507055
Inversion	Chr2	7999751	8085995	LOC_Os02g14520
Inversion	Chr2	7999756	8086005	LOC_Os02g14520
Inversion	Chr3	11411006	11618902
Inversion	Chr3	11411018	11618910
Inversion	Chr8	13369807	13388032
Inversion	Chr11	18797183	18946067
Inversion	Chr11	18797189	18951084

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	2324276	Chr1	40212548	2
Translocation	Chr7	2324282	Chr1	40215290	2
Translocation	Chr6	8055129	Chr1	30811603
Translocation	Chr6	8056073	Chr1	30811604
Translocation	Chr6	17573918	Chr5	10799231
Translocation	Chr11	18947476	Chr2	7702414	LOC_Os11g32130
Translocation	Chr12	22022157	Chr4	15489057

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