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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12580742	C-A	Homo
SBS	Chr1	16967092	C-A	HET
SBS	Chr1	32728046	T-C	HET
SBS	Chr1	43234490	G-A	HET
SBS	Chr10	13104427	C-T	HET
SBS	Chr10	6540450	T-A	HET
SBS	Chr11	23443905	G-A	Homo
SBS	Chr12	11536112	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g19790
SBS	Chr12	16572456	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28070
SBS	Chr3	12629908	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g22040
SBS	Chr3	14310710	G-C	HET
SBS	Chr3	19523407	A-T	HET
SBS	Chr4	10201204	C-T	HET
SBS	Chr4	17297947	C-A	Homo
SBS	Chr4	24861065	G-A	HET
SBS	Chr4	31704017	A-T	HET
SBS	Chr4	32555991	A-T	HET
SBS	Chr5	17263671	C-T	Homo
SBS	Chr6	26500535	C-A	HET
SBS	Chr6	30766202	C-T	HET
SBS	Chr6	7797539	G-C	Homo
SBS	Chr7	18439949	G-A	HET
SBS	Chr7	19070611	C-T	HET
SBS	Chr8	2654873	G-A	Homo
SBS	Chr8	26773478	G-A	HET
SBS	Chr8	4511751	T-C	Homo
SBS	Chr8	5716777	C-T	Homo
SBS	Chr9	8570078	A-C	HET

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	677936	677937	1
Deletion	Chr3	3230238	3230243	5	LOC_Os03g06460
Deletion	Chr5	6466314	6466318	4
Deletion	Chr8	8246397	8246404	7	LOC_Os08g13810
Deletion	Chr3	9141622	9141625	3
Deletion	Chr10	11147186	11147187	1
Deletion	Chr2	12828092	12828093	1
Deletion	Chr4	15064042	15064044	2
Deletion	Chr9	19162002	19162005	3
Deletion	Chr3	19568260	19568415	155
Deletion	Chr1	20948235	20948245	10
Deletion	Chr6	21275099	21275107	8
Deletion	Chr4	22638118	22638125	7
Deletion	Chr11	22981455	22981458	3
Deletion	Chr4	23401631	23401635	4
Deletion	Chr6	24877132	24877138	6
Deletion	Chr11	25013866	25013869	3
Deletion	Chr2	27578864	27578865	1	LOC_Os02g45370
Deletion	Chr4	28362948	28362949	1	LOC_Os04g47800
Deletion	Chr1	28566032	28566036	4

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	38719654	38719654	1
Insertion	Chr11	18874110	18874114	5
Insertion	Chr11	2979141	2979142	2
Insertion	Chr3	6594497	6594500	4
Insertion	Chr6	26149697	26149699	3
Insertion	Chr7	28581796	28581797	2
Insertion	Chr8	27216996	27216996	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9105698	9197729
Inversion	Chr10	9105731	9197757
Inversion	Chr3	13458080	13459178	LOC_Os03g23250
Inversion	Chr8	17562350	18015842
Inversion	Chr8	17562356	18015843
Inversion	Chr5	21329445	21329712

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8247706	Chr4	7717584	2
Translocation	Chr12	9802829	Chr6	7521453
Translocation	Chr9	18154404	Chr5	29894464	LOC_Os09g29840
Translocation	Chr9	19187296	Chr5	29884832	2
Translocation	Chr11	24207834	Chr10	11150143

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