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| Mutant Information |
|---|
| Mutant Name | FN2594-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2594-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 41
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11163052 | T-A | HET | ||
| SBS | Chr1 | 22982834 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g40640 |
| SBS | Chr1 | 33794266 | A-T | HET | ||
| SBS | Chr1 | 34940296 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g60410 |
| SBS | Chr10 | 10780024 | G-T | HET | ||
| SBS | Chr10 | 17528231 | G-A | HET | ||
| SBS | Chr10 | 17861623 | T-C | Homo | ||
| SBS | Chr10 | 6311716 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g11384 |
| SBS | Chr10 | 6351933 | A-T | HET | ||
| SBS | Chr11 | 11110665 | G-A | HET | ||
| SBS | Chr11 | 20884623 | G-A | HET | ||
| SBS | Chr11 | 21121574 | T-A | HET | ||
| SBS | Chr11 | 247854 | C-A | HET | ||
| SBS | Chr11 | 8796968 | G-A | HET | ||
| SBS | Chr12 | 10783644 | C-T | HET | ||
| SBS | Chr12 | 14355216 | G-A | HET | ||
| SBS | Chr12 | 14355217 | G-T | HET | ||
| SBS | Chr12 | 8925539 | T-C | Homo | ||
| SBS | Chr12 | 8972577 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g15700 |
| SBS | Chr2 | 15584349 | A-T | HET | ||
| SBS | Chr2 | 28426520 | T-C | HET | ||
| SBS | Chr2 | 29292022 | T-A | HET | ||
| SBS | Chr2 | 33594359 | C-T | Homo | ||
| SBS | Chr2 | 34188773 | A-G | Homo | ||
| SBS | Chr2 | 7211381 | C-T | HET | ||
| SBS | Chr3 | 12476324 | A-C | HET | ||
| SBS | Chr3 | 18081287 | G-T | HET | ||
| SBS | Chr3 | 19432351 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g34102 |
| SBS | Chr3 | 30743265 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g53620 |
| SBS | Chr4 | 13912119 | C-A | HET | ||
| SBS | Chr4 | 23931298 | C-T | Homo | ||
| SBS | Chr4 | 4368591 | A-T | Homo | ||
| SBS | Chr5 | 18821817 | A-G | HET | ||
| SBS | Chr6 | 10151755 | G-A | HET | ||
| SBS | Chr6 | 10810645 | A-G | HET | ||
| SBS | Chr6 | 5278427 | A-T | HET | ||
| SBS | Chr8 | 24303934 | T-C | Homo | ||
| SBS | Chr8 | 27001896 | C-T | HET | ||
| SBS | Chr8 | 466657 | C-T | Homo | ||
| SBS | Chr9 | 18437206 | T-C | HET | ||
| SBS | Chr9 | 5489551 | A-T | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1692001 | 1720000 | 27999 | 4 |
| Deletion | Chr12 | 7267673 | 7267687 | 14 | |
| Deletion | Chr12 | 10581454 | 10581456 | 2 | |
| Deletion | Chr12 | 11487340 | 11487341 | 1 | LOC_Os12g19720 |
| Deletion | Chr11 | 11802034 | 11802037 | 3 | |
| Deletion | Chr4 | 13496324 | 13496329 | 5 | |
| Deletion | Chr9 | 17814988 | 17815030 | 42 | |
| Deletion | Chr8 | 17878227 | 17878308 | 81 | |
| Deletion | Chr11 | 17992591 | 17992592 | 1 | LOC_Os11g30920 |
| Deletion | Chr1 | 42737043 | 42737065 | 22 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 21313564 | 21313565 | 2 | |
| Insertion | Chr4 | 14600077 | 14600078 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 19416896 | 19541029 | 2 |
| Inversion | Chr12 | 19417059 | 19541035 | 2 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 17145663 | Chr6 | 15940591 | 2 |
| Translocation | Chr11 | 24566569 | Chr10 | 2436152 | LOC_Os11g41034 |
| Translocation | Chr4 | 25756837 | Chr3 | 11224814 | 2 |
| Translocation | Chr11 | 26723745 | Chr7 | 24518287 | 2 |
| Translocation | Chr7 | 28725946 | Chr3 | 35816540 | |
| Translocation | Chr11 | 29010188 | Chr4 | 25203682 | |
| Translocation | Chr3 | 29194570 | Chr1 | 31269208 |