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| Mutant Information |
|---|
| Mutant Name | FN2595-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2595-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 44
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12519952 | A-G | HET | ||
| SBS | Chr1 | 13156146 | G-A | HET | ||
| SBS | Chr1 | 19902217 | G-A | HET | ||
| SBS | Chr1 | 27759093 | C-T | HET | ||
| SBS | Chr1 | 27856179 | G-A | HET | ||
| SBS | Chr1 | 2842270 | A-G | Homo | ||
| SBS | Chr1 | 3141924 | A-T | HET | ||
| SBS | Chr1 | 31634888 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g55010 |
| SBS | Chr1 | 32042906 | A-G | HET | ||
| SBS | Chr1 | 32363942 | C-T | HET | ||
| SBS | Chr1 | 37602405 | T-A | Homo | ||
| SBS | Chr10 | 18481005 | G-A | HET | ||
| SBS | Chr10 | 4372883 | C-A | HET | ||
| SBS | Chr10 | 8126289 | C-A | HET | ||
| SBS | Chr11 | 12896705 | G-C | Homo | ||
| SBS | Chr11 | 1516080 | G-A | HET | ||
| SBS | Chr11 | 23497876 | C-T | Homo | ||
| SBS | Chr11 | 28657415 | C-G | Homo | ||
| SBS | Chr12 | 617940 | T-C | HET | ||
| SBS | Chr12 | 8060514 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g14190 |
| SBS | Chr2 | 11034087 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g18900 |
| SBS | Chr2 | 29099861 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g47620 |
| SBS | Chr2 | 8412687 | G-A | Homo | ||
| SBS | Chr3 | 24070911 | T-A | HET | ||
| SBS | Chr3 | 2439781 | T-A | HET | ||
| SBS | Chr3 | 28167607 | A-G | HET | ||
| SBS | Chr3 | 29257862 | A-T | HET | ||
| SBS | Chr4 | 15175693 | G-T | HET | ||
| SBS | Chr5 | 15315121 | C-T | HET | ||
| SBS | Chr5 | 9163060 | C-A | Homo | ||
| SBS | Chr6 | 27907485 | A-C | Homo | ||
| SBS | Chr6 | 3488565 | C-A | |||
| SBS | Chr6 | 6065469 | C-T | HET | ||
| SBS | Chr7 | 11390747 | A-G | HET | ||
| SBS | Chr7 | 5877239 | C-T | HET | ||
| SBS | Chr8 | 18226376 | G-A | HET | ||
| SBS | Chr8 | 19226003 | C-A | HET | ||
| SBS | Chr8 | 4115814 | T-C | HET | ||
| SBS | Chr8 | 4867770 | C-T | HET | ||
| SBS | Chr8 | 9970683 | C-A | HET | ||
| SBS | Chr9 | 12532280 | A-C | Homo | ||
| SBS | Chr9 | 20102190 | T-C | Homo | ||
| SBS | Chr9 | 3522423 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g07180 |
| SBS | Chr9 | 3528595 | G-A | Homo |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 631249 | 631250 | 1 | LOC_Os11g02240 |
| Deletion | Chr2 | 4636330 | 4636332 | 2 | |
| Deletion | Chr2 | 8263850 | 8263851 | 1 | |
| Deletion | Chr6 | 9658912 | 9658922 | 10 | |
| Deletion | Chr11 | 10781729 | 10781737 | 8 | |
| Deletion | Chr5 | 12698625 | 12698634 | 9 | |
| Deletion | Chr3 | 15691153 | 15691156 | 3 | |
| Deletion | Chr5 | 20130714 | 20130716 | 2 | |
| Deletion | Chr2 | 25162008 | 25162222 | 214 | |
| Deletion | Chr3 | 27595635 | 27595637 | 2 |
Insertions: 6
No Inversion
No Translocation