Search Results
| Mutant Information |
|---|
| Mutant Name | FN2598-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2598-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 5956082 | A-T | HET | ||
| SBS | Chr1 | 13490937 | T-A | HET | ||
| SBS | Chr1 | 33406227 | C-T | HET | ||
| SBS | Chr1 | 33406233 | T-C | HET | ||
| SBS | Chr2 | 12539994 | G-A | Homo | ||
| SBS | Chr2 | 25092697 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g41740 |
| SBS | Chr2 | 25384749 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g42200 |
| SBS | Chr2 | 31422121 | C-T | HET | ||
| SBS | Chr3 | 19684362 | G-A | HET | ||
| SBS | Chr3 | 21145301 | G-A | Homo | ||
| SBS | Chr4 | 10413410 | A-T | Homo | ||
| SBS | Chr5 | 11309099 | G-A | HET | ||
| SBS | Chr6 | 9709265 | C-T | Homo | ||
| SBS | Chr6 | 12559462 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g21730 |
| SBS | Chr6 | 21571017 | G-A | HET | ||
| SBS | Chr6 | 29193529 | G-C | HET | ||
| SBS | Chr7 | 1553988 | A-G | Homo | ||
| SBS | Chr8 | 26466482 | C-T | Homo | ||
| SBS | Chr9 | 17121077 | G-A | HET | ||
| SBS | Chr9 | 17899429 | T-G | HET | ||
| SBS | Chr9 | 20624886 | G-A | Homo | ||
| SBS | Chr10 | 18114749 | T-C | HET | ||
| SBS | Chr11 | 8807564 | G-A | HET | ||
| SBS | Chr11 | 9047249 | G-C | HET | ||
| SBS | Chr11 | 20626286 | A-G | HET | ||
| SBS | Chr12 | 8218525 | G-A | HET | ||
| SBS | Chr12 | 8289956 | C-A | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 3455258 | 3455260 | 2 | |
| Deletion | Chr10 | 3886290 | 3886295 | 5 | |
| Deletion | Chr1 | 6790613 | 6790620 | 7 | |
| Deletion | Chr1 | 7967449 | 7967458 | 9 | |
| Deletion | Chr10 | 8896771 | 8896776 | 5 | LOC_Os10g17610 |
| Deletion | Chr4 | 10418001 | 10431000 | 12999 | LOC_Os04g18760 |
| Deletion | Chr7 | 18849001 | 18886000 | 36999 | 3 |
| Deletion | Chr12 | 19773460 | 19773462 | 2 | |
| Deletion | Chr3 | 22560091 | 22560093 | 2 | LOC_Os03g40570 |
| Deletion | Chr5 | 24373217 | 24373253 | 36 | |
| Deletion | Chr2 | 26019001 | 26044000 | 24999 | 5 |
| Deletion | Chr1 | 26987284 | 26987286 | 2 | |
| Deletion | Chr4 | 27263481 | 27263484 | 3 | |
| Deletion | Chr1 | 40589001 | 40618000 | 28999 | 6 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 6716735 | 6716736 | 2 | |
| Insertion | Chr1 | 32723184 | 32723184 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 11231635 | 11604764 | |
| Inversion | Chr2 | 11231652 | 11604762 | |
| Inversion | Chr1 | 22801126 | 22801648 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 3401625 | Chr6 | 8074784 | LOC_Os08g06160 |
| Translocation | Chr4 | 13589819 | Chr1 | 41115851 | |
| Translocation | Chr11 | 24413996 | Chr5 | 5542128 |