Search Results
| Mutant Information |
|---|
| Mutant Name | FN2607-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2607-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 5153080 | C-T | HET | ||
| SBS | Chr1 | 15534798 | A-T | HET | ||
| SBS | Chr1 | 17077781 | C-G | HET | ||
| SBS | Chr1 | 39576380 | C-A | HET | ||
| SBS | Chr2 | 3399364 | G-A | Homo | ||
| SBS | Chr2 | 29710603 | T-G | Homo | ||
| SBS | Chr3 | 21526346 | A-T | HET | ||
| SBS | Chr3 | 29387940 | T-C | HET | ||
| SBS | Chr3 | 29485884 | G-C | HET | ||
| SBS | Chr3 | 35723283 | A-G | HET | ||
| SBS | Chr4 | 4604103 | T-A | HET | ||
| SBS | Chr4 | 25394964 | C-T | HET | ||
| SBS | Chr4 | 25561761 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g43190 |
| SBS | Chr4 | 26119404 | A-T | HET | ||
| SBS | Chr5 | 4165374 | A-T | HET | ||
| SBS | Chr5 | 4165375 | A-T | HET | ||
| SBS | Chr5 | 12178208 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g20750 |
| SBS | Chr5 | 16582094 | A-T | HET | ||
| SBS | Chr6 | 9250614 | C-T | HET | ||
| SBS | Chr7 | 5879670 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g10810 |
| SBS | Chr7 | 8099578 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g14210 |
| SBS | Chr7 | 16549786 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g28350 |
| SBS | Chr7 | 16650679 | C-T | HET | ||
| SBS | Chr7 | 17143736 | T-C | HET | ||
| SBS | Chr8 | 12145261 | C-T | HET | ||
| SBS | Chr8 | 13047851 | C-T | HET | ||
| SBS | Chr8 | 26330576 | A-T | HET | ||
| SBS | Chr9 | 766948 | C-T | HET | ||
| SBS | Chr10 | 2829243 | C-T | HET | ||
| SBS | Chr10 | 16506887 | C-G | HET | ||
| SBS | Chr11 | 9786904 | A-G | HET | ||
| SBS | Chr12 | 22929920 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g37340 |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 325371 | 325375 | 4 | |
| Deletion | Chr4 | 1329501 | 1329523 | 22 | |
| Deletion | Chr7 | 6146394 | 6146406 | 12 | LOC_Os07g11130 |
| Deletion | Chr9 | 12612967 | 12612968 | 1 | |
| Deletion | Chr8 | 12828495 | 12828496 | 1 | |
| Deletion | Chr3 | 12881950 | 12881952 | 2 | |
| Deletion | Chr10 | 14213580 | 14213581 | 1 | |
| Deletion | Chr7 | 14658999 | 14659008 | 9 | |
| Deletion | Chr5 | 17544269 | 17544270 | 1 | LOC_Os05g30270 |
| Deletion | Chr12 | 20209260 | 20209269 | 9 | |
| Deletion | Chr12 | 22319737 | 22319818 | 81 | |
| Deletion | Chr2 | 25182188 | 25182196 | 8 | |
| Deletion | Chr1 | 30921418 | 30921419 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 2565433 | 2565473 | 41 | |
| Insertion | Chr2 | 33528747 | 33528747 | 1 | |
| Insertion | Chr6 | 20150242 | 20150247 | 6 | LOC_Os06g34670 |
| Insertion | Chr8 | 4159028 | 4159028 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 26170702 | 26170814 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 4108822 | Chr3 | 24004088 | |
| Translocation | Chr7 | 12876825 | Chr6 | 11709162 | |
| Translocation | Chr12 | 13141144 | Chr7 | 10236186 | |
| Translocation | Chr8 | 15980694 | Chr2 | 10614909 | |
| Translocation | Chr7 | 18371983 | Chr1 | 17686323 | LOC_Os07g31020 |
| Translocation | Chr11 | 20051529 | Chr6 | 19235823 | |
| Translocation | Chr5 | 22819004 | Chr4 | 6748786 | LOC_Os05g38910 |
| Translocation | Chr11 | 26259190 | Chr1 | 17461157 | 2 |
| Translocation | Chr11 | 28796373 | Chr2 | 16779300 |