Search Results
Mutant Information |
---|
Mutant Name | FN2618-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2618-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 56
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 20174834 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g36370 |
SBS | Chr2 | 4898817 | A-G | HET | ||
SBS | Chr2 | 6276980 | C-T | HET | ||
SBS | Chr2 | 33146901 | C-A | Homo | ||
SBS | Chr3 | 11069172 | G-T | HET | ||
SBS | Chr3 | 23921290 | C-G | HET | ||
SBS | Chr3 | 24282045 | T-C | HET | ||
SBS | Chr3 | 29595502 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g51680 |
SBS | Chr3 | 30346717 | G-T | HET | ||
SBS | Chr4 | 4723067 | A-T | HET | ||
SBS | Chr4 | 6560999 | G-A | HET | ||
SBS | Chr4 | 6561001 | G-A | HET | ||
SBS | Chr4 | 6561003 | C-A | HET | ||
SBS | Chr4 | 14376167 | G-A | HET | ||
SBS | Chr4 | 14892101 | G-C | HET | ||
SBS | Chr4 | 18316970 | G-C | HET | ||
SBS | Chr4 | 24503045 | C-T | Homo | ||
SBS | Chr4 | 24546838 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g41400 |
SBS | Chr4 | 26340895 | C-T | Homo | ||
SBS | Chr4 | 27851512 | A-G | HET | ||
SBS | Chr4 | 34552812 | T-C | HET | ||
SBS | Chr5 | 5506449 | G-A | HET | ||
SBS | Chr5 | 10433288 | C-A | HET | STOP_GAINED | LOC_Os05g18160 |
SBS | Chr5 | 10519902 | A-T | HET | ||
SBS | Chr6 | 1337720 | G-A | HET | ||
SBS | Chr6 | 10983374 | A-G | HET | ||
SBS | Chr6 | 21831826 | G-A | HET | ||
SBS | Chr7 | 10397571 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g17610 |
SBS | Chr7 | 11513048 | G-A | HET | ||
SBS | Chr7 | 14898546 | T-C | HET | ||
SBS | Chr7 | 21276557 | G-C | HET | ||
SBS | Chr7 | 29425318 | G-A | HET | ||
SBS | Chr8 | 16739552 | A-G | HET | ||
SBS | Chr8 | 21257212 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g33950 |
SBS | Chr8 | 21257213 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g33950 |
SBS | Chr8 | 26844368 | C-T | HET | ||
SBS | Chr9 | 647108 | T-C | HET | ||
SBS | Chr9 | 2715463 | T-C | HET | ||
SBS | Chr9 | 4007632 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g07880 |
SBS | Chr9 | 6514077 | G-A | HET | ||
SBS | Chr9 | 18061832 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g29700 |
SBS | Chr9 | 21535805 | G-C | HET | ||
SBS | Chr10 | 6208794 | T-C | HET | ||
SBS | Chr10 | 8376376 | C-T | HET | ||
SBS | Chr10 | 8697830 | C-G | HET | ||
SBS | Chr10 | 13856162 | T-A | HET | ||
SBS | Chr10 | 18504645 | G-A | HET | ||
SBS | Chr11 | 10722326 | T-C | HET | ||
SBS | Chr11 | 12882918 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g22430 |
SBS | Chr11 | 14296394 | G-T | Homo | ||
SBS | Chr11 | 24869668 | G-A | HET | ||
SBS | Chr11 | 26712618 | C-T | HET | ||
SBS | Chr12 | 1242581 | T-A | HET | ||
SBS | Chr12 | 2626129 | T-C | HET | ||
SBS | Chr12 | 22341289 | A-G | HET | ||
SBS | Chr12 | 22736942 | C-T | HET |
Deletions: 14
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 2356303 | 2356304 | 1 | LOC_Os02g04980 |
Deletion | Chr4 | 4656001 | 4664000 | 7999 | |
Deletion | Chr12 | 5536449 | 5536463 | 14 | LOC_Os12g10440 |
Deletion | Chr6 | 5923718 | 5923720 | 2 | |
Deletion | Chr5 | 6860244 | 6860247 | 3 | |
Deletion | Chr4 | 8246001 | 8414000 | 167999 | 25 |
Deletion | Chr4 | 8423001 | 8467000 | 43999 | 8 |
Deletion | Chr4 | 8486578 | 8486583 | 5 | LOC_Os04g15610 |
Deletion | Chr5 | 11220625 | 11220626 | 1 | |
Deletion | Chr8 | 16361488 | 16361507 | 19 | |
Deletion | Chr2 | 19846001 | 20206000 | 359999 | 48 |
Deletion | Chr2 | 20213001 | 20287000 | 73999 | 7 |
Deletion | Chr2 | 20298001 | 20376000 | 77999 | 6 |
Deletion | Chr7 | 28828184 | 28828185 | 1 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr4 | 13171175 | 13171177 | 3 | |
Insertion | Chr9 | 12676316 | 12676320 | 5 | |
Insertion | Chr4 | 8749036 | 8749036 | 1 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 6360533 | 6622248 | 2 |
Inversion | Chr11 | 15480754 | 15537296 | |
Inversion | Chr11 | 15480777 | 15537307 | |
Inversion | Chr12 | 22217310 | 22399683 | LOC_Os12g36270 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 7230487 | Chr4 | 4655620 | LOC_Os11g12770 |
Translocation | Chr4 | 8943790 | Chr1 | 2012126 | |
Translocation | Chr12 | 13051680 | Chr10 | 2755954 | |
Translocation | Chr8 | 23386247 | Chr7 | 24488804 |