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Mutant Information

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7349573	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g13190
SBS	Chr1	19202026	C-G	HET
SBS	Chr1	24161707	T-A	HET
SBS	Chr1	25688983	A-G	HET
SBS	Chr1	27014370	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g47270
SBS	Chr1	41039171	T-G	HET
SBS	Chr1	41859535	T-A	HET
SBS	Chr2	1199043	A-T	Homo
SBS	Chr2	31396910	C-T	HET
SBS	Chr3	25384135	G-A	Homo
SBS	Chr3	27150589	T-A	HET
SBS	Chr3	31653017	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g55600
SBS	Chr3	32401237	C-A	HET
SBS	Chr3	32849314	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g57630
SBS	Chr3	32849316	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g57630
SBS	Chr3	32849318	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g57630
SBS	Chr4	5827831	G-A	HET
SBS	Chr4	8967869	C-T	HET
SBS	Chr4	10923796	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19610
SBS	Chr4	13173998	A-G	HET
SBS	Chr4	13620205	C-G	HET
SBS	Chr4	19197244	T-C	HET
SBS	Chr4	20120254	G-T	HET
SBS	Chr4	26873213	C-G	Homo
SBS	Chr4	26907568	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g45470
SBS	Chr5	29864166	C-A	HET
SBS	Chr6	6394367	G-A	HET
SBS	Chr6	14560063	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g24800
SBS	Chr6	22082001	G-A	Homo
SBS	Chr6	27558184	G-T	HET
SBS	Chr6	27558185	C-T	HET
SBS	Chr6	27558186	A-T	HET
SBS	Chr7	20183171	A-G	HET
SBS	Chr7	25639891	G-T	HET
SBS	Chr9	1073307	T-A	HET
SBS	Chr9	1073308	G-T	HET
SBS	Chr9	9219332	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15180
SBS	Chr10	4477221	G-C	Homo
SBS	Chr10	17815213	C-T	HET
SBS	Chr10	21401687	G-A	HET
SBS	Chr11	4747049	G-A	HET
SBS	Chr11	4747050	T-A	HET
SBS	Chr11	18365627	A-G	Homo
SBS	Chr12	24767595	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g40060

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	687838	687841	3
Deletion	Chr6	1538644	1538645	1
Deletion	Chr1	1872608	1872846	238
Deletion	Chr5	1958193	1958197	4
Deletion	Chr11	3929518	3929524	6
Deletion	Chr5	8294001	8302000	7999	2
Deletion	Chr9	9245262	9245281	19
Deletion	Chr2	9680928	9680931	3
Deletion	Chr5	10170321	10170324	3
Deletion	Chr12	10338348	10338350	2
Deletion	Chr8	12597001	12663000	65999	10
Deletion	Chr12	13535171	13535198	27
Deletion	Chr6	16320963	16320966	3
Deletion	Chr11	17897455	17897464	9	LOC_Os11g30740
Deletion	Chr5	19868234	19868236	2
Deletion	Chr5	22128297	22128303	6
Deletion	Chr4	26534523	26534528	5
Deletion	Chr1	27402829	27402848	19
Deletion	Chr1	29857231	29857253	22
Deletion	Chr3	32856895	32856906	11
Deletion	Chr4	33402875	33402887	12
Deletion	Chr1	40612902	40612919	17
Deletion	Chr1	41741982	41741990	8	LOC_Os01g72020

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	20621705	20621706	2
Insertion	Chr6	3715848	3715849	2
Insertion	Chr10	13559814	13559817	4

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	27011975	27045398	LOC_Os01g47262
Inversion	Chr1	27011984	27045401	LOC_Os01g47262
Inversion	Chr3	30962499	31498162	2
Inversion	Chr3	30970792	31262086	LOC_Os03g54020

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3952272	Chr1	2817450
Translocation	Chr9	7357468	Chr3	32501183
Translocation	Chr10	8946498	Chr3	4712348	LOC_Os10g17700
Translocation	Chr10	18360414	Chr6	1117470
Translocation	Chr10	18534356	Chr6	1117465	LOC_Os10g34710
Translocation	Chr4	29209418	Chr2	24568877

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