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Mutant Information

Mutant Name	FN2626-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2626-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10320778	T-C	HET
SBS	Chr1	17629510	A-G	Homo
SBS	Chr1	20077872	T-C	HET
SBS	Chr1	25572013	G-A	HET
SBS	Chr1	33406642	A-G	HET
SBS	Chr1	38824419	G-C	HET
SBS	Chr10	898643	A-G	HET
SBS	Chr11	28682238	C-T	HET
SBS	Chr12	24829663	A-C	HET
SBS	Chr2	10331730	G-T	HET
SBS	Chr2	15552863	G-C	HET
SBS	Chr2	3752470	C-T	HET
SBS	Chr2	7310876	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g13620
SBS	Chr3	16178785	C-T	HET
SBS	Chr3	2039203	G-A	HET
SBS	Chr4	8372293	G-A	HET
SBS	Chr5	24571382	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g41950
SBS	Chr5	8256138	G-T	HET
SBS	Chr5	8686306	G-A	HET
SBS	Chr5	9910512	G-A	HET
SBS	Chr6	10763079	C-T	HET
SBS	Chr6	9873073	G-A	HET
SBS	Chr7	24143401	G-A	HET
SBS	Chr7	5992485	G-A	HET
SBS	Chr8	19339503	G-A	HET
SBS	Chr9	1806494	C-A	HET
SBS	Chr9	21604445	C-A	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	8653862	8653864	2
Deletion	Chr2	9300846	9300847	1
Deletion	Chr6	9547697	9547698	1
Deletion	Chr10	10652516	10652838	322
Deletion	Chr8	13578759	13578760	1
Deletion	Chr6	14215155	14215156	1
Deletion	Chr1	14509762	14509841	79
Deletion	Chr12	17778566	17778569	3
Deletion	Chr5	21218001	21245000	26999	5
Deletion	Chr3	21462256	21462257	1
Deletion	Chr11	26727910	26727911	1
Deletion	Chr4	26780749	26780750	1
Deletion	Chr1	37224333	37224334	1	LOC_Os01g64080

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	5026126	5026127	2
Insertion	Chr10	7665783	7665784	2	LOC_Os10g14120
Insertion	Chr11	10453742	10453751	10
Insertion	Chr11	10526573	10526573	1
Insertion	Chr11	19416435	19416436	2
Insertion	Chr12	15707385	15707385	1
Insertion	Chr12	18133235	18133236	2
Insertion	Chr12	26973827	26973828	2
Insertion	Chr12	8491249	8491249	1
Insertion	Chr12	8978787	8978799	13
Insertion	Chr2	27283863	27283864	2
Insertion	Chr2	31383990	31384013	24
Insertion	Chr4	10516215	10516215	1	LOC_Os04g18910
Insertion	Chr4	14600077	14600078	2
Insertion	Chr5	17268170	17268171	2
Insertion	Chr5	9802418	9802418	1
Insertion	Chr9	2935867	2935867	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6664384	6821487	2
Inversion	Chr12	11996189	12009128
Inversion	Chr8	20062451	20970797
Inversion	Chr8	20370841	20970790

Translocations: 45

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	321750	Chr11	305576	2
Translocation	Chr9	1269780	Chr3	18058077
Translocation	Chr12	2005231	Chr6	23454864
Translocation	Chr4	2085576	Chr1	27847886
Translocation	Chr11	3435320	Chr10	467576
Translocation	Chr5	4616083	Chr3	5945872
Translocation	Chr8	4649955	Chr4	18885962	LOC_Os08g08170
Translocation	Chr11	5131338	Chr8	2543758
Translocation	Chr7	5461233	Chr2	683819	2
Translocation	Chr8	8367587	Chr2	16568332	LOC_Os08g13960
Translocation	Chr5	9123390	Chr3	24143216
Translocation	Chr5	9425514	Chr4	4120446	2
Translocation	Chr12	10482998	Chr11	17795238	2
Translocation	Chr9	10546836	Chr4	1273386	LOC_Os09g17190
Translocation	Chr12	13371574	Chr3	26895072	2
Translocation	Chr4	14116236	Chr2	19325009	2
Translocation	Chr10	16098010	Chr7	4798227	LOC_Os10g30870
Translocation	Chr8	16320885	Chr5	15019256	2
Translocation	Chr8	16788612	Chr5	8556320
Translocation	Chr12	17844574	Chr10	5024637
Translocation	Chr6	18029575	Chr1	15311883	2
Translocation	Chr11	18279665	Chr3	29622495
Translocation	Chr12	18645782	Chr11	21364893	2
Translocation	Chr12	18849043	Chr4	4358503
Translocation	Chr9	20294567	Chr4	10954977
Translocation	Chr11	22974698	Chr2	18690864
Translocation	Chr11	22995419	Chr7	21960411
Translocation	Chr6	23251200	Chr3	13645054	LOC_Os06g39160
Translocation	Chr6	23437421	Chr4	33991189
Translocation	Chr7	25127755	Chr2	21836310
Translocation	Chr3	25304079	Chr1	20739167	2
Translocation	Chr12	25596405	Chr8	5918481	LOC_Os12g41270
Translocation	Chr3	25761122	Chr2	16648678
Translocation	Chr11	26285142	Chr2	10494457	2
Translocation	Chr12	27080746	Chr6	8332724
Translocation	Chr12	27317373	Chr11	15082111
Translocation	Chr11	27437971	Chr7	25323793	LOC_Os11g45360
Translocation	Chr11	27729943	Chr5	15019262	2
Translocation	Chr11	28172411	Chr7	9845941	LOC_Os11g46890
Translocation	Chr6	28261849	Chr1	41494810
Translocation	Chr11	28341616	Chr8	6341604	LOC_Os11g47130
Translocation	Chr11	28650696	Chr7	17052118	LOC_Os11g47446
Translocation	Chr11	28650909	Chr1	18700197
Translocation	Chr3	31810779	Chr2	25633199	2
Translocation	Chr3	35300955	Chr2	16480493	2

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