Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN2631-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2631-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13669555 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g24260 |
| SBS | Chr1 | 209766 | A-T | Homo | ||
| SBS | Chr1 | 28961743 | G-A | HET | ||
| SBS | Chr1 | 9474257 | G-T | Homo | ||
| SBS | Chr10 | 15378908 | G-A | HET | ||
| SBS | Chr10 | 15378909 | C-T | HET | ||
| SBS | Chr10 | 16571153 | A-G | HET | ||
| SBS | Chr11 | 12911121 | C-T | HET | ||
| SBS | Chr11 | 1584522 | A-T | HET | ||
| SBS | Chr11 | 18114580 | G-A | HET | STOP_GAINED | LOC_Os11g31120 |
| SBS | Chr11 | 26315175 | A-G | Homo | ||
| SBS | Chr11 | 26981857 | C-G | HET | ||
| SBS | Chr11 | 8977722 | C-T | HET | ||
| SBS | Chr12 | 14339182 | G-A | HET | ||
| SBS | Chr12 | 2108499 | C-T | HET | ||
| SBS | Chr12 | 23524789 | G-C | HET | ||
| SBS | Chr2 | 11110218 | G-C | HET | ||
| SBS | Chr3 | 1013561 | C-T | HET | ||
| SBS | Chr3 | 2324308 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g04860 |
| SBS | Chr3 | 24702744 | C-A | Homo | ||
| SBS | Chr4 | 25852071 | C-A | HET | ||
| SBS | Chr4 | 26214586 | G-A | HET | ||
| SBS | Chr4 | 28727461 | C-G | HET | ||
| SBS | Chr4 | 33804433 | G-A | HET | ||
| SBS | Chr4 | 33804434 | C-T | HET | ||
| SBS | Chr4 | 8047015 | A-G | HET | ||
| SBS | Chr5 | 16943255 | C-T | HET | ||
| SBS | Chr5 | 29902267 | C-G | HET | ||
| SBS | Chr6 | 1285195 | A-T | Homo | ||
| SBS | Chr6 | 15370066 | G-A | HET | ||
| SBS | Chr6 | 16184382 | C-A | HET | ||
| SBS | Chr6 | 29891942 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g49340 |
| SBS | Chr7 | 3362328 | G-C | Homo | ||
| SBS | Chr7 | 5980918 | G-A | HET | ||
| SBS | Chr8 | 15945266 | G-C | HET | ||
| SBS | Chr9 | 17591339 | C-T | Homo |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1284260 | 1284261 | 1 | |
| Deletion | Chr5 | 1752763 | 1752773 | 10 | LOC_Os05g03920 |
| Deletion | Chr12 | 1896494 | 1896501 | 7 | LOC_Os12g04450 |
| Deletion | Chr10 | 2753541 | 2753548 | 7 | |
| Deletion | Chr2 | 6757783 | 6757785 | 2 | |
| Deletion | Chr3 | 8952516 | 8952518 | 2 | |
| Deletion | Chr6 | 11199103 | 11199119 | 16 | |
| Deletion | Chr8 | 11281730 | 11281737 | 7 | |
| Deletion | Chr4 | 11679852 | 11679860 | 8 | |
| Deletion | Chr2 | 15605188 | 15605190 | 2 | |
| Deletion | Chr5 | 17605995 | 17606004 | 9 | |
| Deletion | Chr10 | 17922061 | 17922063 | 2 | |
| Deletion | Chr8 | 19640001 | 19653000 | 12999 | 3 |
| Deletion | Chr5 | 20357940 | 20357941 | 1 | |
| Deletion | Chr10 | 22707591 | 22707601 | 10 | |
| Deletion | Chr6 | 25405552 | 25405560 | 8 | LOC_Os06g42300 |
| Deletion | Chr2 | 35353967 | 35353969 | 2 | |
| Deletion | Chr2 | 35922631 | 35922634 | 3 | |
| Deletion | Chr1 | 38129822 | 38129825 | 3 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 26714535 | 26714536 | 2 | |
| Insertion | Chr5 | 6590401 | 6590409 | 9 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 8871821 | Chr1 | 18619628 | |
| Translocation | Chr6 | 13698860 | Chr1 | 2504238 | |
| Translocation | Chr10 | 22550435 | Chr1 | 2473716 | |
| Translocation | Chr4 | 30715907 | Chr1 | 28240039 |