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| Mutant Information |
|---|
| Mutant Name | FN267-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN267-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 25369840 | C-T | HOMO | INTRON | |
| SBS | Chr1 | 27768285 | C-A | HET | INTERGENIC | |
| SBS | Chr1 | 37904635 | C-T | HET | INTRON | |
| SBS | Chr1 | 7230199 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 21220023 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g39700 |
| SBS | Chr11 | 14183016 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 17971517 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 4558402 | C-T | HOMO | INTRON | |
| SBS | Chr2 | 9950974 | T-A | HOMO | UTR_3_PRIME | |
| SBS | Chr3 | 35238019 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 35842734 | T-A | HET | INTRON | |
| SBS | Chr4 | 20418545 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 269625 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 11811723 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 16595957 | T-A | HOMO | INTRON | |
| SBS | Chr6 | 20565593 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 27915645 | T-A | HET | INTRON | |
| SBS | Chr7 | 11828358 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 28737531 | C-T | HOMO | INTRON | |
| SBS | Chr7 | 29530654 | T-C | HET | UTR_3_PRIME | |
| SBS | Chr8 | 16185132 | A-C | HET | INTRON | |
| SBS | Chr8 | 21032258 | T-A | HET | INTERGENIC | |
| SBS | Chr8 | 27255417 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 27255418 | G-T | HET | INTERGENIC |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 5448964 | 5448968 | 4 | |
| Deletion | Chr2 | 6665386 | 6665389 | 3 | |
| Deletion | Chr8 | 7781837 | 7781839 | 2 | |
| Deletion | Chr7 | 11279480 | 11279501 | 21 | |
| Deletion | Chr7 | 13320393 | 13320491 | 98 | |
| Deletion | Chr7 | 13541678 | 13541682 | 4 | LOC_Os07g23944 |
| Deletion | Chr7 | 15034995 | 15035007 | 12 | |
| Deletion | Chr9 | 16194670 | 16194671 | 1 | |
| Deletion | Chr6 | 21477551 | 21477552 | 1 | |
| Deletion | Chr8 | 27221398 | 27221424 | 26 | |
| Deletion | Chr2 | 34360945 | 34360947 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 20711488 | 20711489 | 2 | |
| Insertion | Chr2 | 24179472 | 24179473 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 5709342 | 7529481 | 2 |
| Inversion | Chr4 | 19560938 | 19956773 | |
| Inversion | Chr4 | 19561199 | 19956720 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 5709297 | Chr4 | 19561192 | LOC_Os10g10380 |
| Translocation | Chr10 | 7529427 | Chr4 | 19560869 | LOC_Os10g13850 |