Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10861977	A-G	Homo
SBS	Chr1	13047683	T-A	Homo
SBS	Chr1	13047703	G-C	Homo
SBS	Chr1	23756818	A-T	HET
SBS	Chr1	39620874	G-T	Homo	STOP_GAINED	LOC_Os01g68160
SBS	Chr1	4118683	C-T	HET
SBS	Chr10	19483247	A-T	HET
SBS	Chr10	19483248	G-T	HET
SBS	Chr10	7644605	T-A	HET
SBS	Chr11	11974037	C-T	Homo
SBS	Chr12	20973096	C-T	HET	STOP_GAINED	LOC_Os12g34610
SBS	Chr12	21534268	A-G	HET
SBS	Chr12	23814324	C-A	Homo
SBS	Chr12	5208074	A-G	Homo
SBS	Chr2	11535329	T-A	HET
SBS	Chr2	35063936	A-T	HET
SBS	Chr3	19617805	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g35380
SBS	Chr3	2282972	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04800
SBS	Chr3	27448672	G-T	HET
SBS	Chr3	32100151	A-T	HET
SBS	Chr3	36397360	C-T	HET
SBS	Chr4	14110288	G-A	HET
SBS	Chr4	18311105	G-A	HET
SBS	Chr4	27139764	T-C	HET
SBS	Chr4	28847908	G-A	HET
SBS	Chr5	12011365	T-A	Homo
SBS	Chr5	2495986	T-G	HET
SBS	Chr5	8244555	G-A	Homo
SBS	Chr6	18832445	G-C	HET
SBS	Chr6	7855567	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g14090
SBS	Chr7	13540924	A-T	HET
SBS	Chr7	16458020	G-T	HET
SBS	Chr7	7558384	T-C	HET
SBS	Chr8	18391490	G-C	Homo
SBS	Chr8	19217167	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g31110
SBS	Chr8	7486773	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12660
SBS	Chr9	508788	C-T	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2245510	2245596	86
Deletion	Chr9	4337283	4337295	12
Deletion	Chr4	7294736	7294738	2
Deletion	Chr4	7963105	7963106	1
Deletion	Chr5	9401156	9401157	1
Deletion	Chr5	11354574	11354581	7
Deletion	Chr5	12131073	12131074	1
Deletion	Chr10	15546224	15546225	1
Deletion	Chr3	16348001	16364000	15999	4
Deletion	Chr5	21813163	21813164	1	LOC_Os05g37280
Deletion	Chr2	29308001	29315000	6999	LOC_Os02g47910
Deletion	Chr3	34100254	34100258	4

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	31772635	31772635	1
Insertion	Chr10	21612212	21612214	3
Insertion	Chr12	21981288	21981290	3
Insertion	Chr4	8368902	8368902	1
Insertion	Chr8	23539260	23539261	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	16348354	16386651	LOC_Os03g28370
Inversion	Chr4	24203739	24211704	LOC_Os04g40790

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	572102	Chr1	38706625	2
Translocation	Chr10	572201	Chr1	38706626	2
Translocation	Chr10	572202	Chr4	24186694	2
Translocation	Chr10	572494	Chr4	24211689	LOC_Os10g01890
Translocation	Chr4	724907	Chr3	31273254
Translocation	Chr6	8086437	Chr5	5898980
Translocation	Chr5	8554284	Chr2	14893235
Translocation	Chr12	9725455	Chr4	10817572
Translocation	Chr11	12631455	Chr10	4408877
Translocation	Chr9	15074541	Chr6	4406867
Translocation	Chr7	19570787	Chr6	10581656	LOC_Os07g32750
Translocation	Chr7	21174152	Chr4	8324312

Main menu