Search Results
Mutant Information |
---|
Mutant Name | FN2671-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2671-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 37
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 4118683 | C-T | HET | ||
SBS | Chr1 | 10861977 | A-G | Homo | ||
SBS | Chr1 | 13047683 | T-A | Homo | ||
SBS | Chr1 | 13047703 | G-C | Homo | ||
SBS | Chr1 | 23756818 | A-T | HET | ||
SBS | Chr1 | 39620874 | G-T | Homo | STOP_GAINED | LOC_Os01g68160 |
SBS | Chr2 | 11535329 | T-A | HET | ||
SBS | Chr2 | 35063936 | A-T | HET | ||
SBS | Chr3 | 2282972 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g04800 |
SBS | Chr3 | 19617805 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g35380 |
SBS | Chr3 | 27448672 | G-T | HET | ||
SBS | Chr3 | 32100151 | A-T | HET | ||
SBS | Chr3 | 36397360 | C-T | HET | ||
SBS | Chr4 | 14110288 | G-A | HET | ||
SBS | Chr4 | 18311105 | G-A | HET | ||
SBS | Chr4 | 27139764 | T-C | HET | ||
SBS | Chr4 | 28847908 | G-A | HET | ||
SBS | Chr5 | 2495986 | T-G | HET | ||
SBS | Chr5 | 8244555 | G-A | Homo | ||
SBS | Chr5 | 12011365 | T-A | Homo | ||
SBS | Chr6 | 7855567 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g14090 |
SBS | Chr6 | 18832445 | G-C | HET | ||
SBS | Chr7 | 7558384 | T-C | HET | ||
SBS | Chr7 | 13540924 | A-T | HET | ||
SBS | Chr7 | 16458020 | G-T | HET | ||
SBS | Chr8 | 7486773 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g12660 |
SBS | Chr8 | 18391490 | G-C | Homo | ||
SBS | Chr8 | 19217167 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g31110 |
SBS | Chr9 | 508788 | C-T | HET | ||
SBS | Chr10 | 7644605 | T-A | HET | ||
SBS | Chr10 | 19483247 | A-T | HET | ||
SBS | Chr10 | 19483248 | G-T | HET | ||
SBS | Chr11 | 11974037 | C-T | Homo | ||
SBS | Chr12 | 5208074 | A-G | Homo | ||
SBS | Chr12 | 20973096 | C-T | HET | STOP_GAINED | LOC_Os12g34610 |
SBS | Chr12 | 21534268 | A-G | HET | ||
SBS | Chr12 | 23814324 | C-A | Homo |
Deletions: 12
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr9 | 2245510 | 2245596 | 86 | |
Deletion | Chr9 | 4337283 | 4337295 | 12 | |
Deletion | Chr4 | 7294736 | 7294738 | 2 | |
Deletion | Chr4 | 7963105 | 7963106 | 1 | |
Deletion | Chr5 | 9401156 | 9401157 | 1 | |
Deletion | Chr5 | 11354574 | 11354581 | 7 | |
Deletion | Chr5 | 12131073 | 12131074 | 1 | |
Deletion | Chr10 | 15546224 | 15546225 | 1 | |
Deletion | Chr3 | 16348001 | 16364000 | 15999 | 4 |
Deletion | Chr5 | 21813163 | 21813164 | 1 | LOC_Os05g37280 |
Deletion | Chr2 | 29308001 | 29315000 | 6999 | LOC_Os02g47910 |
Deletion | Chr3 | 34100254 | 34100258 | 4 |
Insertions: 5
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr3 | 16348354 | 16386651 | LOC_Os03g28370 |
Inversion | Chr4 | 24203739 | 24211704 | LOC_Os04g40790 |
Translocations: 12
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 572102 | Chr1 | 38706625 | 2 |
Translocation | Chr10 | 572201 | Chr1 | 38706626 | 2 |
Translocation | Chr10 | 572202 | Chr4 | 24186694 | 2 |
Translocation | Chr10 | 572494 | Chr4 | 24211689 | LOC_Os10g01890 |
Translocation | Chr4 | 724907 | Chr3 | 31273254 | |
Translocation | Chr6 | 8086437 | Chr5 | 5898980 | |
Translocation | Chr5 | 8554284 | Chr2 | 14893235 | |
Translocation | Chr12 | 9725455 | Chr4 | 10817572 | |
Translocation | Chr11 | 12631455 | Chr10 | 4408877 | |
Translocation | Chr9 | 15074541 | Chr6 | 4406867 | |
Translocation | Chr7 | 19570787 | Chr6 | 10581656 | LOC_Os07g32750 |
Translocation | Chr7 | 21174152 | Chr4 | 8324312 |