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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11752913	C-T	HET	STOP_GAINED	LOC_Os01g21050
SBS	Chr1	24360526	A-C	HET
SBS	Chr1	3599698	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g07530
SBS	Chr10	11389485	G-A	HET
SBS	Chr10	16473108	T-A	Homo
SBS	Chr10	4449157	A-G	Homo
SBS	Chr11	10378174	G-A	Homo
SBS	Chr11	21394906	T-A	HET
SBS	Chr12	12932499	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g22900
SBS	Chr12	13186519	C-T	HET
SBS	Chr12	16167808	C-A	HET
SBS	Chr12	3052596	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06370
SBS	Chr2	25016460	C-T	HET
SBS	Chr2	8223886	G-A	Homo
SBS	Chr3	32501221	C-T	HET
SBS	Chr4	23381239	G-A	Homo
SBS	Chr4	26301802	T-C	HET
SBS	Chr4	29741067	G-A	HET
SBS	Chr4	30356034	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51230
SBS	Chr4	34117526	A-C	HET
SBS	Chr5	21765557	A-T	HET
SBS	Chr5	5154448	C-A	Homo
SBS	Chr7	21190648	C-T	Homo
SBS	Chr8	11002016	G-A	Homo
SBS	Chr8	27848406	G-C	HET
SBS	Chr8	9601011	G-A	Homo
SBS	Chr8	9968042	G-A	HET
SBS	Chr9	17850822	A-T	HET
SBS	Chr9	7323076	G-T	Homo

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1717937	1717939	2
Deletion	Chr9	1958812	1958832	20
Deletion	Chr11	4338320	4338324	4
Deletion	Chr7	5515871	5515872	1
Deletion	Chr8	8194658	8194659	1
Deletion	Chr5	9390192	9390198	6
Deletion	Chr4	9589363	9589373	10
Deletion	Chr10	10975069	10975070	1
Deletion	Chr12	11787030	11787031	1	LOC_Os12g20210
Deletion	Chr12	16441079	16441082	3	LOC_Os12g27880
Deletion	Chr10	16897730	16897737	7	LOC_Os10g32170
Deletion	Chr7	18123696	18123846	150
Deletion	Chr7	20806848	20806851	3	LOC_Os07g34720
Deletion	Chr6	22219621	22219624	3
Deletion	Chr1	29710600	29710601	1
Deletion	Chr6	30176295	30176325	30
Deletion	Chr1	32949139	32949166	27
Deletion	Chr1	35990933	35990937	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	16074078	16074116	39
Insertion	Chr5	15973185	15973188	4
Insertion	Chr5	21823814	21823815	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	10512105	10512519
Inversion	Chr11	21649464	22132893	LOC_Os11g36670
Inversion	Chr11	21651020	22184583
Inversion	Chr11	22132957	22353835	2
Inversion	Chr11	22184575	22353829	2
Inversion	Chr5	26826087	27742984	2
Inversion	Chr5	26826091	27742983	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1305230	Chr1	4111742	2
Translocation	Chr10	1318247	Chr1	4111753	2
Translocation	Chr10	2239005	Chr1	2819544

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