Search Results
| Mutant Information |
|---|
| Mutant Name | FN2678-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2678-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 42
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11167046 | T-C | HET | ||
| SBS | Chr1 | 22946257 | C-A | HET | ||
| SBS | Chr1 | 32302099 | A-C | Homo | ||
| SBS | Chr2 | 611042 | G-A | HET | ||
| SBS | Chr2 | 22742246 | G-A | HET | ||
| SBS | Chr2 | 24560970 | C-A | HET | ||
| SBS | Chr2 | 27429010 | G-A | HET | ||
| SBS | Chr2 | 32513178 | G-T | HET | ||
| SBS | Chr2 | 32614635 | C-T | HET | ||
| SBS | Chr2 | 33056602 | A-T | HET | ||
| SBS | Chr3 | 16623311 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g29224 |
| SBS | Chr3 | 26704929 | G-A | HET | ||
| SBS | Chr4 | 6734281 | A-T | HET | ||
| SBS | Chr4 | 6734282 | C-T | HET | ||
| SBS | Chr4 | 9854981 | C-T | HET | ||
| SBS | Chr4 | 19960823 | C-A | HET | ||
| SBS | Chr4 | 26263478 | C-T | HET | ||
| SBS | Chr5 | 6823938 | A-T | HET | ||
| SBS | Chr5 | 10951862 | C-T | HET | ||
| SBS | Chr5 | 12110753 | C-T | HET | ||
| SBS | Chr6 | 3280304 | A-T | HET | ||
| SBS | Chr6 | 8535685 | T-G | Homo | ||
| SBS | Chr6 | 30720070 | C-T | Homo | ||
| SBS | Chr6 | 30840121 | T-A | HET | ||
| SBS | Chr7 | 6087038 | A-C | HET | ||
| SBS | Chr8 | 18795157 | C-T | Homo | ||
| SBS | Chr8 | 19388034 | G-T | HET | ||
| SBS | Chr8 | 21265259 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g33960 |
| SBS | Chr8 | 24665690 | G-T | HET | ||
| SBS | Chr8 | 26596098 | T-A | HET | ||
| SBS | Chr10 | 6432685 | G-A | Homo | ||
| SBS | Chr10 | 15900494 | T-A | HET | ||
| SBS | Chr10 | 17398030 | G-A | HET | ||
| SBS | Chr10 | 17398031 | A-G | HET | ||
| SBS | Chr10 | 22949865 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g42570 |
| SBS | Chr11 | 7212697 | T-C | HET | ||
| SBS | Chr11 | 14754167 | G-A | HET | ||
| SBS | Chr11 | 26034302 | T-C | HET | ||
| SBS | Chr11 | 28340747 | C-T | HET | ||
| SBS | Chr12 | 17711240 | G-A | HET | ||
| SBS | Chr12 | 23544294 | A-T | HET | ||
| SBS | Chr12 | 25591567 | C-T | HET |
Deletions: 9
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 471775 | 471775 | 1 | |
| Insertion | Chr6 | 24551280 | 24551281 | 2 |
No Inversion
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 7057104 | Chr1 | 31953042 | |
| Translocation | Chr9 | 10385347 | Chr6 | 13546816 | |
| Translocation | Chr12 | 18585513 | Chr2 | 15031266 | 2 |
| Translocation | Chr9 | 21767270 | Chr7 | 20719143 | |
| Translocation | Chr3 | 25354097 | Chr1 | 27882661 |