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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6003036	T-A	Homo
SBS	Chr11	8581575	C-A	HET
SBS	Chr12	12421901	G-A	HET
SBS	Chr12	1555723	G-T	HET
SBS	Chr12	16303474	G-C	HET
SBS	Chr2	17751750	C-T	HET
SBS	Chr2	17937894	G-A	HET
SBS	Chr2	28034651	G-A	Homo
SBS	Chr2	7580285	G-T	HET
SBS	Chr2	7580286	A-T	HET
SBS	Chr3	23359823	C-G	HET
SBS	Chr3	24300047	C-A	HET
SBS	Chr3	26054340	A-G	HET
SBS	Chr3	28985919	A-G	HET
SBS	Chr3	30021409	C-T	HET
SBS	Chr3	34887662	G-C	Homo
SBS	Chr3	8157830	C-T	HET
SBS	Chr4	17151487	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g28930
SBS	Chr4	33976574	C-T	HET
SBS	Chr4	4568421	C-T	HET
SBS	Chr4	7138341	A-T	HET
SBS	Chr5	14299450	T-C	HET
SBS	Chr6	1161717	G-T	HET
SBS	Chr6	12555710	T-C	HET
SBS	Chr6	1496309	T-C	HET
SBS	Chr6	16414547	A-T	HET
SBS	Chr6	21160498	G-A	Homo
SBS	Chr6	24004931	G-A	Homo
SBS	Chr7	21804805	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g36450
SBS	Chr8	11868091	A-G	HET
SBS	Chr8	21517111	A-G	HET
SBS	Chr8	9907337	T-C	Homo
SBS	Chr9	10457764	C-A	HET
SBS	Chr9	12192459	T-C	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	565755	565756	1
Deletion	Chr6	2715914	2715916	2
Deletion	Chr7	9116299	9116305	6
Deletion	Chr6	9983759	9983832	73
Deletion	Chr12	12005119	12005205	86
Deletion	Chr1	14987911	14987913	2
Deletion	Chr12	15753138	15753140	2
Deletion	Chr12	18230900	18230901	1	LOC_Os12g30360
Deletion	Chr11	20236026	20236027	1
Deletion	Chr2	25162008	25162222	214
Deletion	Chr12	26825569	26825570	1
Deletion	Chr5	29395001	29428000	32999	5
Deletion	Chr2	31336745	31336780	35

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	2805544	2805544	1
Insertion	Chr10	5956549	5956549	1
Insertion	Chr10	7072025	7072025	1
Insertion	Chr12	11540047	11540047	1
Insertion	Chr12	15517904	15517909	6
Insertion	Chr12	21982395	21982395	1
Insertion	Chr2	20435482	20435483	2
Insertion	Chr2	24766580	24766580	1
Insertion	Chr2	4783111	4783111	1
Insertion	Chr4	13936774	13936774	1
Insertion	Chr4	2067626	2067626	1
Insertion	Chr5	21816867	21816867	1
Insertion	Chr5	5064073	5064075	3
Insertion	Chr6	10986230	10986230	1
Insertion	Chr6	21857133	21857133	1
Insertion	Chr7	17560179	17560180	2
Insertion	Chr8	27201068	27201068	1
Insertion	Chr9	7293235	7293310	76

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	381995	403575
Inversion	Chr12	3329622	3329834
Inversion	Chr3	11823343	12149813	2
Inversion	Chr3	11823355	12149819	2
Inversion	Chr7	26565319	26565894
Inversion	Chr11	27027100	27787878	LOC_Os11g44690
Inversion	Chr11	27027102	27787875	LOC_Os11g44690

Translocations: 25

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	888356	Chr5	15739822	LOC_Os12g02570
Translocation	Chr10	3537102	Chr3	28970458	2
Translocation	Chr7	6255373	Chr1	22546892	LOC_Os07g11360
Translocation	Chr8	6751268	Chr2	610967	2
Translocation	Chr9	6881544	Chr4	15380380
Translocation	Chr10	7655035	Chr5	12229015
Translocation	Chr9	8941257	Chr1	30237136
Translocation	Chr4	10337196	Chr1	14847555
Translocation	Chr7	11637953	Chr4	9582176	2
Translocation	Chr11	11720698	Chr9	10245949
Translocation	Chr12	11862700	Chr9	14162147	LOC_Os12g20310
Translocation	Chr11	13434998	Chr2	8032395
Translocation	Chr12	14126253	Chr11	27123888
Translocation	Chr9	15854008	Chr5	5571087	LOC_Os09g26240
Translocation	Chr8	16637720	Chr6	1224653
Translocation	Chr12	18630300	Chr7	6891494
Translocation	Chr8	19196967	Chr1	3076900
Translocation	Chr11	19870614	Chr8	5195576	LOC_Os11g33970
Translocation	Chr5	20414639	Chr1	43066651
Translocation	Chr7	20984940	Chr5	10173549	LOC_Os07g35030
Translocation	Chr11	22545893	Chr2	19802229
Translocation	Chr12	22869215	Chr6	18064672	LOC_Os12g37270
Translocation	Chr4	25155730	Chr2	13247170
Translocation	Chr11	27840147	Chr2	16105686
Translocation	Chr11	28757339	Chr2	4343973

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