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Mutant Information

Mutant Name	FN2691-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2691-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 57

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4179380	T-A	HET
SBS	Chr1	4179381	C-A	HET
SBS	Chr1	6754899	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g12360
SBS	Chr1	9055591	C-T	Homo
SBS	Chr1	10642982	C-T	Homo
SBS	Chr1	11894571	G-A	HET
SBS	Chr1	20470322	T-A	HET
SBS	Chr1	21659948	C-A	HET
SBS	Chr1	26018832	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g45800
SBS	Chr1	39064069	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g67300
SBS	Chr1	41141646	C-A	HET
SBS	Chr2	10710907	C-T	HET
SBS	Chr3	23450769	C-A	Homo
SBS	Chr3	23450771	T-A	Homo
SBS	Chr4	19277503	C-T	HET
SBS	Chr4	19582073	C-A	HET
SBS	Chr4	19800127	C-A	HET
SBS	Chr4	20900321	T-C	HET
SBS	Chr4	28550098	A-T	HET
SBS	Chr4	30851457	G-A	Homo
SBS	Chr5	22970976	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g39170
SBS	Chr5	27305203	G-A	HET
SBS	Chr5	29749055	G-T	HET
SBS	Chr6	3727378	T-G	HET
SBS	Chr6	10820222	C-T	HET
SBS	Chr6	11900520	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20650
SBS	Chr6	12872771	G-A	HET
SBS	Chr6	15752740	G-A	Homo
SBS	Chr6	21807973	A-G	HET
SBS	Chr6	30828837	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g50940
SBS	Chr7	8692159	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g15140
SBS	Chr7	9725195	G-A	Homo
SBS	Chr7	19151175	A-T	HET
SBS	Chr7	19321840	A-T	Homo
SBS	Chr7	24830382	T-G	HET
SBS	Chr7	27480707	G-A	HET
SBS	Chr7	29207589	T-C	HET
SBS	Chr7	29606933	G-A	HET	STOP_GAINED	LOC_Os07g49440
SBS	Chr8	8290374	C-T	HET
SBS	Chr9	8539592	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14450
SBS	Chr10	1790951	C-T	HET
SBS	Chr10	3008738	T-G	HET
SBS	Chr10	6064123	T-C	Homo
SBS	Chr10	10238505	T-A	Homo
SBS	Chr10	23098655	A-G	HET
SBS	Chr11	7622157	C-A	HET
SBS	Chr11	8087822	G-A	Homo
SBS	Chr11	8460332	G-A	HET
SBS	Chr12	672240	C-A	Homo
SBS	Chr12	1013405	G-A	Homo
SBS	Chr12	3167435	T-C	HET
SBS	Chr12	8930003	G-A	HET
SBS	Chr12	13019257	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g23030
SBS	Chr12	13019258	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g23030
SBS	Chr12	14289121	G-C	HET
SBS	Chr12	15366433	T-A	Homo
SBS	Chr12	23217907	T-A	HET

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	49552	49554	2
Deletion	Chr10	505001	529000	23999	5
Deletion	Chr10	532001	854000	321999	52
Deletion	Chr12	672635	672637	2
Deletion	Chr12	868052	868095	43
Deletion	Chr8	2335306	2335307	1
Deletion	Chr11	3891001	3987000	95999	17
Deletion	Chr4	6304476	6304487	11
Deletion	Chr10	6525679	6525699	20
Deletion	Chr5	7036438	7036441	3
Deletion	Chr10	10154662	10154664	2
Deletion	Chr3	11941012	11941018	6
Deletion	Chr4	12062449	12062451	2
Deletion	Chr12	12795281	12795293	12
Deletion	Chr11	14010961	14010974	13
Deletion	Chr12	15318424	15318435	11
Deletion	Chr11	16687294	16687295	1	LOC_Os11g28790
Deletion	Chr11	17065001	17077000	11999	2
Deletion	Chr8	18992722	18992723	1
Deletion	Chr12	21780819	21780823	4
Deletion	Chr3	21858395	21858396	1
Deletion	Chr1	21903150	21903162	12
Deletion	Chr5	22953329	22953332	3
Deletion	Chr7	23832477	23832485	8
Deletion	Chr3	26540831	26540832	1
Deletion	Chr2	27237697	27237698	1
Deletion	Chr7	27955976	27955977	1
Deletion	Chr2	28431986	28431996	10
Deletion	Chr1	41047479	41047481	2

No Insertion

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	13348787	13378766	2
Inversion	Chr11	13348805	13378774	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	16085015	Chr1	10234283	LOC_Os10g30850

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