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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7115651	G-A	HET
SBS	Chr1	13161831	C-T	Homo
SBS	Chr1	18434695	C-T	HET
SBS	Chr1	33144487	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g57340
SBS	Chr2	20979732	T-A	Homo
SBS	Chr2	26311167	C-T	HET
SBS	Chr3	5189489	A-G	HET
SBS	Chr3	13334085	C-T	HET
SBS	Chr4	14521174	T-A	HET
SBS	Chr4	28271304	T-A	Homo
SBS	Chr5	15345185	A-T	HET
SBS	Chr5	19790492	C-A	Homo
SBS	Chr5	22608729	T-C	Homo
SBS	Chr6	9407962	G-A	HET
SBS	Chr6	12751238	T-A	Homo
SBS	Chr6	30031776	A-G	Homo
SBS	Chr7	8723465	T-A	Homo
SBS	Chr7	10856467	T-C	HET
SBS	Chr7	12342091	G-A	HET
SBS	Chr7	16624026	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g28430
SBS	Chr8	13777220	G-A	Homo
SBS	Chr8	27037678	T-A	HET
SBS	Chr9	8300933	T-A	HET
SBS	Chr9	11875435	A-G	HET
SBS	Chr9	19799988	G-T	HET
SBS	Chr9	21648670	C-A	HET
SBS	Chr10	4769334	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08820
SBS	Chr11	19399517	T-C	HET
SBS	Chr11	20167171	C-T	HET
SBS	Chr11	20266105	G-A	HET
SBS	Chr11	20447487	T-A	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2098907	2098911	4
Deletion	Chr8	3757121	3757124	3
Deletion	Chr4	7221072	7221094	22
Deletion	Chr5	7555717	7555722	5
Deletion	Chr12	9424544	9424545	1
Deletion	Chr7	12229819	12229820	1
Deletion	Chr1	14299169	14299170	1	LOC_Os01g25320
Deletion	Chr4	17436802	17436803	1
Deletion	Chr12	20728199	20728211	12
Deletion	Chr2	20946599	20946607	8
Deletion	Chr2	22740794	22740807	13
Deletion	Chr8	24663543	24663544	1
Deletion	Chr1	24789001	24840000	50999	7
Deletion	Chr1	24847001	24901000	53999	7
Deletion	Chr1	34930694	34930695	1
Deletion	Chr1	42526281	42526282	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	23506687	23506687	1
Insertion	Chr5	27620588	27620588	1
Insertion	Chr11	25356937	25356939	3
Insertion	Chr4	8684439	8684439	1
Insertion	Chr7	6154870	6154908	39
Insertion	Chr10	2603536	2603536	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11783905	12362081
Inversion	Chr7	15712920	15713389

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1197	Chr7	1263
Translocation	Chr10	5623895	Chr6	8458384
Translocation	Chr12	7544467	Chr7	15462258
Translocation	Chr4	8961823	Chr1	8614313	2
Translocation	Chr7	11311411	Chr4	31871937
Translocation	Chr12	11388054	Chr3	25079487
Translocation	Chr10	12584505	Chr3	35504341	2
Translocation	Chr10	12585400	Chr3	35504337	2
Translocation	Chr11	14496439	Chr4	3486550
Translocation	Chr11	19843686	Chr1	1322432	LOC_Os11g33938
Translocation	Chr10	19938212	Chr1	11784366	2
Translocation	Chr10	19938214	Chr1	12362082
Translocation	Chr12	25748407	Chr4	21768457	2

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