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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16925804	A-C	HET
SBS	Chr10	701899	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g02120
SBS	Chr11	13135299	A-G	HET
SBS	Chr12	10701689	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18510
SBS	Chr12	13997081	G-A	HET
SBS	Chr12	1723128	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04110
SBS	Chr12	24308987	G-C	HET
SBS	Chr2	23675380	C-T	Homo
SBS	Chr2	31938888	G-A	Homo
SBS	Chr2	7384544	A-G	HET
SBS	Chr4	13564858	G-A	HET
SBS	Chr4	34823947	T-A	Homo
SBS	Chr5	25455100	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g43780
SBS	Chr6	12524160	A-T	Homo
SBS	Chr6	216931	T-A	HET
SBS	Chr6	4106902	T-G	HET
SBS	Chr6	5907892	G-A	HET
SBS	Chr6	6937834	G-T	Homo
SBS	Chr7	13420849	C-A	HET
SBS	Chr7	26568546	C-T	HET
SBS	Chr7	6709834	C-T	HET
SBS	Chr8	2219805	G-A	HET
SBS	Chr9	14113331	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g23740
SBS	Chr9	15394814	C-T	HET
SBS	Chr9	22860772	G-A	Homo
SBS	Chr9	8555390	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14470
SBS	Chr9	8555391	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14470

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1711428	1711430	2
Deletion	Chr8	2899829	2899830	1
Deletion	Chr2	3608571	3608572	1
Deletion	Chr7	6709724	6709739	15	LOC_Os07g12020
Deletion	Chr2	7597207	7597208	1	LOC_Os02g13950
Deletion	Chr2	7982424	7982425	1
Deletion	Chr1	8205028	8205038	10
Deletion	Chr2	10362001	10394000	31999	6
Deletion	Chr4	12394513	12394516	3	LOC_Os04g21880
Deletion	Chr9	12710852	12710854	2
Deletion	Chr11	13951831	13951838	7
Deletion	Chr3	14160602	14160613	11
Deletion	Chr4	23298544	23298546	2
Deletion	Chr12	27174001	27185000	10999	LOC_Os12g43760
Deletion	Chr6	27360876	27360877	1	LOC_Os06g45270

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	14535519	14535519	1
Insertion	Chr1	1825758	1825758	1
Insertion	Chr2	1897728	1897728	1
Insertion	Chr3	27219007	27219007	1
Insertion	Chr5	9850835	9850835	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	7261610	7751677	LOC_Os06g13220
Inversion	Chr6	7261622	7751688	LOC_Os06g13220
Inversion	Chr7	9602484	9893395

Translocations: 29

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	339194	Chr5	11351937	2
Translocation	Chr6	599623	Chr2	10358457	LOC_Os06g02054
Translocation	Chr9	1170911	Chr3	27458659	2
Translocation	Chr10	2544249	Chr8	6320203	2
Translocation	Chr7	4604520	Chr1	7703824
Translocation	Chr9	4695166	Chr1	39119371
Translocation	Chr9	4697035	Chr3	5010024
Translocation	Chr9	4855200	Chr6	21517979	LOC_Os09g09080
Translocation	Chr9	8114403	Chr6	23491898
Translocation	Chr5	9430574	Chr1	40606660
Translocation	Chr5	9870525	Chr4	15936366
Translocation	Chr4	9968764	Chr3	19375648	2
Translocation	Chr9	10540556	Chr2	808478
Translocation	Chr9	10734093	Chr8	4010220	LOC_Os09g17540
Translocation	Chr9	13456014	Chr4	9486019
Translocation	Chr10	13685210	Chr6	9639446	2
Translocation	Chr8	14737174	Chr7	5215167
Translocation	Chr5	17271019	Chr2	16769546
Translocation	Chr4	19145481	Chr3	17622036	2
Translocation	Chr9	19529882	Chr6	18133104	2
Translocation	Chr8	20584384	Chr6	1072417
Translocation	Chr11	22995031	Chr5	24915608	2
Translocation	Chr12	24160557	Chr3	8413098	LOC_Os12g39250
Translocation	Chr4	25083447	Chr1	18542307	LOC_Os04g42399
Translocation	Chr6	26232667	Chr2	5607366	2
Translocation	Chr6	26232983	Chr2	5607338	2
Translocation	Chr11	27806756	Chr6	9599987
Translocation	Chr4	28104631	Chr1	26714405
Translocation	Chr8	28318532	Chr4	10350395

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