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Mutant Information

Mutant NameFN2705-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2705-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 29
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr139330946G-AHET
SBSChr139844055A-THET
SBSChr139844200G-THET
SBSChr1022808781T-CHETNON_SYNONYMOUS_CODINGLOC_Os10g42364
SBSChr10401814A-THET
SBSChr108227467T-GHomo
SBSChr1115739419G-AHomo
SBSChr231027536G-AHET
SBSChr26373808T-CHET
SBSChr27758807C-AHET
SBSChr29640219C-THET
SBSChr29640220C-THET
SBSChr312550076T-AHomo
SBSChr317361752G-AHET
SBSChr327675728C-THET
SBSChr34545567G-AHomo
SBSChr410787821T-CHET
SBSChr414251381T-GHET
SBSChr419377320G-THomo
SBSChr42719422G-AHET
SBSChr525927547C-THET
SBSChr617740217A-GHET
SBSChr65723151G-AHET
SBSChr720719123T-GHomo
SBSChr720719134T-GHomo
SBSChr75977639C-AHET
SBSChr81432367G-AHET
SBSChr824435829C-AHomo
SBSChr99243727G-AHETNON_SYNONYMOUS_CODINGLOC_Os09g15220

Deletions: 11
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr3143806114380654
DeletionChr428729492873059110
DeletionChr64866036486604812
DeletionChr1111459216114592204
DeletionChr415251727152517314
DeletionChr1116629562166295631
DeletionChr1117547765175477716
DeletionChr1120132310201323111
DeletionChr7201713702017138010
DeletionChr1399973813999739110
DeletionChr142747532427475331

Insertions: 5
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr122390104223901052
InsertionChr1120063236200632372
InsertionChr8216999821699992
InsertionChr916438837164388382
InsertionChr94160493416051826

Inversions: 3
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr81295461612972758
InversionChr13557619236116769LOC_Os01g61490
InversionChr13557619636116771LOC_Os01g61490

Translocations: 7
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr106833638Chr6183846622
TranslocationChr1111508165Chr8199741892
TranslocationChr421017953Chr1319453302
TranslocationChr421018827Chr1319453012
TranslocationChr421276255Chr125939207
TranslocationChr421342366Chr125939203LOC_Os04g35114
TranslocationChr722813149Chr423951109