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Mutant Information |
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Mutant Name | FN2705-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2705-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 29
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 39330946 | G-A | HET | ||
SBS | Chr1 | 39844055 | A-T | HET | ||
SBS | Chr1 | 39844200 | G-T | HET | ||
SBS | Chr10 | 22808781 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g42364 |
SBS | Chr10 | 401814 | A-T | HET | ||
SBS | Chr10 | 8227467 | T-G | Homo | ||
SBS | Chr11 | 15739419 | G-A | Homo | ||
SBS | Chr2 | 31027536 | G-A | HET | ||
SBS | Chr2 | 6373808 | T-C | HET | ||
SBS | Chr2 | 7758807 | C-A | HET | ||
SBS | Chr2 | 9640219 | C-T | HET | ||
SBS | Chr2 | 9640220 | C-T | HET | ||
SBS | Chr3 | 12550076 | T-A | Homo | ||
SBS | Chr3 | 17361752 | G-A | HET | ||
SBS | Chr3 | 27675728 | C-T | HET | ||
SBS | Chr3 | 4545567 | G-A | Homo | ||
SBS | Chr4 | 10787821 | T-C | HET | ||
SBS | Chr4 | 14251381 | T-G | HET | ||
SBS | Chr4 | 19377320 | G-T | Homo | ||
SBS | Chr4 | 2719422 | G-A | HET | ||
SBS | Chr5 | 25927547 | C-T | HET | ||
SBS | Chr6 | 17740217 | A-G | HET | ||
SBS | Chr6 | 5723151 | G-A | HET | ||
SBS | Chr7 | 20719123 | T-G | Homo | ||
SBS | Chr7 | 20719134 | T-G | Homo | ||
SBS | Chr7 | 5977639 | C-A | HET | ||
SBS | Chr8 | 1432367 | G-A | HET | ||
SBS | Chr8 | 24435829 | C-A | Homo | ||
SBS | Chr9 | 9243727 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g15220 |
Deletions: 11
Insertions: 5
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 12954616 | 12972758 | |
Inversion | Chr1 | 35576192 | 36116769 | LOC_Os01g61490 |
Inversion | Chr1 | 35576196 | 36116771 | LOC_Os01g61490 |
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 6833638 | Chr6 | 18384662 | 2 |
Translocation | Chr11 | 11508165 | Chr8 | 19974189 | 2 |
Translocation | Chr4 | 21017953 | Chr1 | 31945330 | 2 |
Translocation | Chr4 | 21018827 | Chr1 | 31945301 | 2 |
Translocation | Chr4 | 21276255 | Chr1 | 25939207 | |
Translocation | Chr4 | 21342366 | Chr1 | 25939203 | LOC_Os04g35114 |
Translocation | Chr7 | 22813149 | Chr4 | 23951109 |