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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19006648	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g34470
SBS	Chr1	2122813	T-C	HET
SBS	Chr1	26590618	G-T	HET
SBS	Chr1	35225556	A-G	HET
SBS	Chr1	39149412	G-A	Homo
SBS	Chr10	12206886	T-C	Homo
SBS	Chr10	13090494	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g25310
SBS	Chr10	19049756	T-A	HET
SBS	Chr10	246162	A-G	HET
SBS	Chr10	9709582	C-T	HET
SBS	Chr11	20089422	T-A	HET
SBS	Chr11	20464422	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g34920
SBS	Chr11	24910187	C-T	HET
SBS	Chr12	16322867	G-A	HET
SBS	Chr12	18186432	T-C	HET
SBS	Chr12	1904601	G-A	HET
SBS	Chr2	11445051	G-T	Homo
SBS	Chr2	15356562	T-A	Homo
SBS	Chr3	19076269	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g33360
SBS	Chr3	22568128	C-T	Homo
SBS	Chr3	22590726	C-A	Homo
SBS	Chr4	14786124	A-T	HET
SBS	Chr4	27587401	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g46510
SBS	Chr4	4185036	T-C	HET
SBS	Chr4	7425975	G-C	HET
SBS	Chr5	13070834	A-G	HET
SBS	Chr5	15781389	T-C	HET
SBS	Chr5	22551499	A-T	Homo
SBS	Chr5	26297219	T-C	HET
SBS	Chr5	5623503	G-A	HET
SBS	Chr6	25213505	C-T	HET
SBS	Chr7	11238581	T-C	HET
SBS	Chr7	17599737	T-C	HET
SBS	Chr8	13444228	G-A	Homo
SBS	Chr9	15382791	A-T	HET
SBS	Chr9	19901046	A-T	HET
SBS	Chr9	21320248	A-G	HET
SBS	Chr9	22067261	G-A	Homo

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	446581	446583	2
Deletion	Chr3	1480730	1480824	94
Deletion	Chr5	3525001	3562000	36999	7
Deletion	Chr10	6461381	6461382	1	LOC_Os10g11690
Deletion	Chr10	6835640	6835641	1
Deletion	Chr5	7264824	7264844	20
Deletion	Chr8	8783307	8783313	6
Deletion	Chr2	11510200	11510206	6	LOC_Os02g19670
Deletion	Chr5	20355402	20355404	2	LOC_Os05g34340
Deletion	Chr3	21451397	21451406	9
Deletion	Chr5	21549001	21577000	27999	5
Deletion	Chr5	21578001	21591000	12999	3
Deletion	Chr6	21884149	21884157	8
Deletion	Chr6	22384700	22384764	64
Deletion	Chr1	34591210	34591211	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	32483158	32483158	1
Insertion	Chr5	18369178	18369179	2
Insertion	Chr5	2697098	2697099	2
Insertion	Chr6	23088753	23088753	1
Insertion	Chr7	19566534	19566536	3
Insertion	Chr8	13064848	13064855	8
Insertion	Chr8	17293658	17293661	4
Insertion	Chr8	2824391	2824391	1	LOC_Os08g05360

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5134528	5212044	2
Inversion	Chr11	19154788	19155385
Inversion	Chr7	22735085	23182677	2
Inversion	Chr7	22735097	23182688	2
Inversion	Chr1	31774879	32528715

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6808365	Chr11	13095610
Translocation	Chr10	6936257	Chr5	10740004
Translocation	Chr3	8256556	Chr2	33465394	LOC_Os03g15120
Translocation	Chr6	9979238	Chr4	1179008	LOC_Os06g17230
Translocation	Chr3	16449147	Chr2	28715218
Translocation	Chr9	18095053	Chr4	34904195	2
Translocation	Chr11	20175274	Chr2	20082609	2

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