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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37507648	G-C	HET	INTERGENIC
SBS	Chr1	37507649	C-A	HET	INTERGENIC
SBS	Chr1	9434029	T-C	HET	UTR_3_PRIME
SBS	Chr10	17730796	C-T	HET	INTERGENIC
SBS	Chr10	3642139	A-G	HET	INTERGENIC
SBS	Chr10	4405639	G-A	HET	INTERGENIC
SBS	Chr11	16284265	T-G	HET	INTERGENIC
SBS	Chr2	20841243	A-C	HOMO	UTR_3_PRIME
SBS	Chr2	2634256	G-A	HOMO	INTERGENIC
SBS	Chr2	32813563	C-T	HET	INTRON
SBS	Chr2	33538703	T-C	HET	INTERGENIC
SBS	Chr2	8657231	G-T	HET	INTERGENIC
SBS	Chr3	23504046	C-T	HOMO	INTERGENIC
SBS	Chr3	26889953	G-A	HET	INTERGENIC
SBS	Chr4	2596474	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g05200
SBS	Chr4	33051752	C-T	HET	INTERGENIC
SBS	Chr5	3396544	T-G	HET	INTERGENIC
SBS	Chr5	7640675	A-T	HOMO	INTRON
SBS	Chr6	25372163	A-T	HET	INTRON
SBS	Chr6	2740088	C-T	HET	INTRON
SBS	Chr7	14338951	C-T	HET	INTERGENIC
SBS	Chr7	2042434	G-T	HOMO	INTERGENIC
SBS	Chr7	20923497	C-T	HOMO	INTERGENIC
SBS	Chr7	2524882	G-C	HOMO	INTERGENIC
SBS	Chr8	25156066	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g39730
SBS	Chr8	3411296	C-T	HET	INTERGENIC
SBS	Chr9	13514650	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g22360
SBS	Chr9	19119158	G-A	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	64870	65224	354
Deletion	Chr7	1040851	1040856	5
Deletion	Chr6	1706333	1706335	2
Deletion	Chr7	6227649	6227652	3
Deletion	Chr12	8068786	8068788	2
Deletion	Chr4	11041854	11041856	2
Deletion	Chr12	11725122	11725136	14
Deletion	Chr4	13754369	13754370	1
Deletion	Chr4	14868171	14868172	1
Deletion	Chr6	16082829	16082830	1	LOC_Os06g28310
Deletion	Chr6	16785006	16785011	5
Deletion	Chr5	18350712	18350713	1
Deletion	Chr1	19947915	19947916	1
Deletion	Chr5	20510461	20510462	1
Deletion	Chr10	21456586	21456591	5	LOC_Os10g40060
Deletion	Chr2	22470466	22470474	8
Deletion	Chr11	25389394	25389396	2
Deletion	Chr5	25393618	25393627	9	LOC_Os05g43680
Deletion	Chr3	27678245	27678246	1

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	21538185	21538185	1
Insertion	Chr10	10391464	10391467	4
Insertion	Chr10	15627408	15627443	36
Insertion	Chr11	10087119	10087126	8
Insertion	Chr12	599150	599161	12
Insertion	Chr2	12409833	12409838	6
Insertion	Chr2	26793248	26793253	6
Insertion	Chr3	31582364	31582365	2
Insertion	Chr3	5965993	5966016	24
Insertion	Chr3	7417100	7417100	1
Insertion	Chr3	7548846	7548909	64
Insertion	Chr3	7708653	7708658	6
Insertion	Chr5	12204265	12204265	1
Insertion	Chr5	26339971	26339972	2
Insertion	Chr6	20483525	20483542	18
Insertion	Chr6	8484327	8484327	1
Insertion	Chr8	12206491	12206491	1
Insertion	Chr8	13577623	13577623	1
Insertion	Chr9	10970100	10970107	8
Insertion	Chr9	15117433	15117456	24
Insertion	Chr9	6940267	6940274	8

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	833387	833735	LOC_Os10g02330
Inversion	Chr11	18825586	18828949
Inversion	Chr6	24684474	24686396	LOC_Os06g41250

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr9	1617625	Chr1	18222002
Translocation	Chr5	5657243	Chr4	27176915
Translocation	Chr8	16449095	Chr6	24693727
Translocation	Chr11	19361833	Chr2	7462906
Translocation	Chr11	19361845	Chr2	7462449

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