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| Mutant Information |
|---|
| Mutant Name | FN2756-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2756-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10338098 | T-A | HET | ||
| SBS | Chr1 | 1220008 | A-G | HET | ||
| SBS | Chr1 | 25988202 | G-A | HET | ||
| SBS | Chr1 | 2705820 | T-A | HET | ||
| SBS | Chr1 | 2705821 | T-A | HET | ||
| SBS | Chr1 | 30674377 | A-G | HET | ||
| SBS | Chr1 | 31780580 | T-A | HET | ||
| SBS | Chr1 | 31829407 | A-T | HET | ||
| SBS | Chr1 | 31829408 | C-T | HET | ||
| SBS | Chr1 | 32593026 | G-A | HET | ||
| SBS | Chr1 | 34236329 | A-G | HET | ||
| SBS | Chr1 | 40187573 | T-A | HET | ||
| SBS | Chr10 | 2837559 | C-A | HET | ||
| SBS | Chr10 | 6949626 | A-G | HET | ||
| SBS | Chr11 | 11837190 | G-A | HET | ||
| SBS | Chr11 | 12613191 | G-T | Homo | ||
| SBS | Chr11 | 2561379 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g05640 |
| SBS | Chr11 | 6072187 | T-C | HET | ||
| SBS | Chr12 | 13234893 | T-A | Homo | ||
| SBS | Chr12 | 19324468 | G-A | Homo | ||
| SBS | Chr12 | 23863604 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g38840 |
| SBS | Chr2 | 12022759 | T-C | HET | ||
| SBS | Chr2 | 33050915 | G-T | HET | ||
| SBS | Chr2 | 33660546 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g54950 |
| SBS | Chr2 | 34571220 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g56470 |
| SBS | Chr2 | 4273579 | G-A | HET | ||
| SBS | Chr3 | 31761794 | C-T | HET | ||
| SBS | Chr3 | 32589559 | G-A | HET | ||
| SBS | Chr4 | 1304862 | C-G | Homo | ||
| SBS | Chr4 | 14605535 | C-T | HET | ||
| SBS | Chr6 | 5417713 | A-G | HET | ||
| SBS | Chr7 | 1051848 | T-C | HET | ||
| SBS | Chr7 | 3142393 | G-T | Homo | ||
| SBS | Chr8 | 2121835 | C-T | Homo | ||
| SBS | Chr8 | 2280668 | A-G | HET | ||
| SBS | Chr8 | 24911772 | G-A | Homo | ||
| SBS | Chr8 | 626114 | T-C | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 4692035 | 4692037 | 2 | LOC_Os04g08640 |
| Deletion | Chr7 | 4811246 | 4811249 | 3 | |
| Deletion | Chr2 | 6144001 | 6242000 | 97999 | 18 |
| Deletion | Chr5 | 6260919 | 6260921 | 2 | |
| Deletion | Chr9 | 6695802 | 6695803 | 1 | LOC_Os09g11910 |
| Deletion | Chr6 | 7381576 | 7381586 | 10 | |
| Deletion | Chr7 | 12378404 | 12378407 | 3 | LOC_Os07g22160 |
| Deletion | Chr11 | 12703147 | 12703160 | 13 | |
| Deletion | Chr7 | 12784123 | 12784150 | 27 | |
| Deletion | Chr11 | 12928032 | 12928033 | 1 | |
| Deletion | Chr7 | 14334994 | 14335004 | 10 | |
| Deletion | Chr9 | 14580019 | 14580028 | 9 | |
| Deletion | Chr11 | 23681828 | 23681833 | 5 | |
| Deletion | Chr3 | 26574067 | 26574072 | 5 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 309583 | 309584 | 2 | |
| Insertion | Chr3 | 29575658 | 29575658 | 1 | |
| Insertion | Chr4 | 1172272 | 1172273 | 2 | |
| Insertion | Chr8 | 19393879 | 19393879 | 1 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 7672677 | Chr11 | 12902997 | 2 |
| Translocation | Chr12 | 7673491 | Chr11 | 12902991 | 2 |