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| Mutant Information |
|---|
| Mutant Name | FN276-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN276-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15043653 | C-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g27000 |
| SBS | Chr1 | 15168726 | G-C | HET | INTRON | |
| SBS | Chr1 | 23170802 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 4147436 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g08430 |
| SBS | Chr1 | 4147437 | T-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g08430 |
| SBS | Chr1 | 8815421 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 10456858 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 17182502 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr10 | 5135605 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g09510 |
| SBS | Chr10 | 7638077 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g14040 |
| SBS | Chr3 | 12785336 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 22420635 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 12074398 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 20599982 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 2105767 | G-A | HET | INTRON | |
| SBS | Chr5 | 10562448 | C-T | HET | INTRON | |
| SBS | Chr5 | 14066268 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g24310 |
| SBS | Chr5 | 1452075 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 16046777 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 25756704 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 714182 | G-A | HET | INTRON | |
| SBS | Chr6 | 3419113 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 960494 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 2752698 | T-C | HET | INTERGENIC |
Deletions: 24
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1303959 | 1303978 | 19 | |
| Deletion | Chr2 | 1914579 | 1914591 | 12 | LOC_Os02g04340 |
| Deletion | Chr1 | 4984420 | 4984430 | 10 | |
| Deletion | Chr1 | 5215953 | 5215962 | 9 | LOC_Os01g10010 |
| Deletion | Chr1 | 5270539 | 5270541 | 2 | LOC_Os01g10110 |
| Deletion | Chr9 | 7283894 | 7283901 | 7 | |
| Deletion | Chr4 | 8626602 | 8626610 | 8 | LOC_Os04g15890 |
| Deletion | Chr1 | 8896408 | 8896409 | 1 | |
| Deletion | Chr12 | 10442159 | 10442166 | 7 | |
| Deletion | Chr5 | 11440577 | 11440578 | 1 | |
| Deletion | Chr1 | 12823304 | 12823313 | 9 | |
| Deletion | Chr8 | 13973277 | 13973278 | 1 | LOC_Os08g23170 |
| Deletion | Chr8 | 16219395 | 16219398 | 3 | LOC_Os08g26685 |
| Deletion | Chr1 | 18786064 | 18786089 | 25 | |
| Deletion | Chr11 | 18875367 | 18875369 | 2 | |
| Deletion | Chr6 | 19615165 | 19615166 | 1 | |
| Deletion | Chr11 | 19887470 | 19887471 | 1 | |
| Deletion | Chr9 | 22626269 | 22626277 | 8 | |
| Deletion | Chr5 | 23047234 | 23047237 | 3 | |
| Deletion | Chr4 | 24274926 | 24274927 | 1 | |
| Deletion | Chr8 | 26480753 | 26480960 | 207 | |
| Deletion | Chr7 | 29194260 | 29194266 | 6 | LOC_Os07g48760 |
| Deletion | Chr4 | 32366443 | 32366444 | 1 | |
| Deletion | Chr1 | 35885421 | 35885428 | 7 | LOC_Os01g61990 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 5044642 | 5044642 | 1 | |
| Insertion | Chr11 | 19595026 | 19595027 | 2 | |
| Insertion | Chr2 | 17454917 | 17454918 | 2 | LOC_Os02g29380 |
| Insertion | Chr3 | 11455771 | 11455771 | 1 |
No Inversion
No Translocation