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| Mutant Information |
|---|
| Mutant Name | FN2893-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2893-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14620833 | T-G | HET | INTERGENIC | |
| SBS | Chr1 | 27642257 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 32952566 | T-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 8046024 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 21861310 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g35880 |
| SBS | Chr2 | 13386087 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g22410 |
| SBS | Chr3 | 13128107 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g22730 |
| SBS | Chr3 | 18047237 | A-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr3 | 24740335 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 31437699 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr3 | 35692155 | T-C | HET | UTR_3_PRIME | |
| SBS | Chr3 | 36204771 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g64070 |
| SBS | Chr4 | 13576327 | G-C | HET | INTRON | |
| SBS | Chr4 | 1528263 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 24539704 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr4 | 28170371 | C-T | HET | UTR_5_PRIME | |
| SBS | Chr4 | 31240651 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g52540 |
| SBS | Chr4 | 33244441 | C-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 9969015 | A-G | HET | INTERGENIC | |
| SBS | Chr5 | 20629532 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 26048464 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g44792 |
| SBS | Chr6 | 1026763 | C-G | HET | INTERGENIC | |
| SBS | Chr6 | 15810741 | C-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 24207415 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g40600 |
| SBS | Chr6 | 6446150 | A-T | HOMO | INTRON | |
| SBS | Chr8 | 3135127 | T-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 3305840 | G-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 3643453 | A-G | HOMO | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 997759 | 997762 | 3 | |
| Deletion | Chr10 | 1393092 | 1393093 | 1 | |
| Deletion | Chr10 | 1946406 | 1946407 | 1 | |
| Deletion | Chr11 | 4530392 | 4530393 | 1 | |
| Deletion | Chr4 | 7211905 | 7211906 | 1 | |
| Deletion | Chr5 | 8336541 | 8336542 | 1 | |
| Deletion | Chr1 | 9514665 | 9514667 | 2 | |
| Deletion | Chr9 | 10788198 | 10788200 | 2 | LOC_Os09g17630 |
| Deletion | Chr11 | 13746502 | 13746503 | 1 | LOC_Os11g24170 |
| Deletion | Chr4 | 17137394 | 17137404 | 10 | LOC_Os04g28910 |
| Deletion | Chr11 | 18808639 | 18808644 | 5 | |
| Deletion | Chr1 | 19382779 | 19382783 | 4 | |
| Deletion | Chr4 | 20056133 | 20056134 | 1 | |
| Deletion | Chr11 | 21728506 | 21728510 | 4 | |
| Deletion | Chr1 | 25044220 | 25044223 | 3 | |
| Deletion | Chr11 | 25070322 | 25070329 | 7 | LOC_Os11g41750 |
| Deletion | Chr6 | 25320238 | 25320240 | 2 | |
| Deletion | Chr11 | 28397805 | 28397820 | 15 | |
| Deletion | Chr6 | 30341708 | 30341709 | 1 | |
| Deletion | Chr4 | 31220153 | 31220155 | 2 | LOC_Os04g52504 |
Insertions: 9
No Inversion
No Translocation