Search Results
Mutant Information |
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Mutant Name | FN2894-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2894-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 21
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 6833809 | G-A | HOMO | INTRON | |
SBS | Chr1 | 8591874 | A-T | HET | INTERGENIC | |
SBS | Chr1 | 14561965 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 30221387 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g52560 |
SBS | Chr1 | 31330697 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 9649666 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 9574442 | T-C | HET | INTERGENIC | |
SBS | Chr3 | 17211521 | T-C | HET | INTERGENIC | |
SBS | Chr3 | 21566837 | A-G | HET | INTRON | |
SBS | Chr3 | 23951352 | C-T | HET | UTR_3_PRIME | |
SBS | Chr3 | 31647636 | C-A | HET | INTERGENIC | |
SBS | Chr4 | 18102285 | A-T | HET | INTERGENIC | |
SBS | Chr5 | 20542035 | T-C | HET | INTERGENIC | |
SBS | Chr5 | 23733713 | T-C | HET | INTRON | |
SBS | Chr7 | 20634145 | T-A | HET | INTERGENIC | |
SBS | Chr7 | 21325786 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g35620 |
SBS | Chr7 | 25102414 | T-A | HOMO | INTRON | |
SBS | Chr8 | 12232483 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g20359 |
SBS | Chr9 | 11233496 | C-T | HET | INTERGENIC | |
SBS | Chr9 | 22829788 | G-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr11 | 19876092 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g34020 |
Deletions: 25
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr9 | 1062144 | 1062150 | 6 | |
Deletion | Chr11 | 1069382 | 1069396 | 14 | |
Deletion | Chr8 | 2017801 | 2017819 | 18 | |
Deletion | Chr11 | 2057366 | 2057370 | 4 | LOC_Os11g04830 |
Deletion | Chr1 | 6372374 | 6372375 | 1 | |
Deletion | Chr2 | 9050292 | 9050304 | 12 | |
Deletion | Chr9 | 9934113 | 9934125 | 12 | |
Deletion | Chr2 | 10941263 | 10941264 | 1 | LOC_Os02g18770 |
Deletion | Chr9 | 11346280 | 11346302 | 22 | |
Deletion | Chr10 | 12475934 | 12475935 | 1 | |
Deletion | Chr6 | 15973120 | 15973122 | 2 | |
Deletion | Chr5 | 16082910 | 16082911 | 1 | |
Deletion | Chr7 | 16442661 | 16442662 | 1 | |
Deletion | Chr11 | 17287331 | 17287339 | 8 | |
Deletion | Chr1 | 17587627 | 17587642 | 15 | |
Deletion | Chr1 | 17618925 | 17618927 | 2 | |
Deletion | Chr1 | 19990841 | 19990842 | 1 | |
Deletion | Chr3 | 20554765 | 20554776 | 11 | |
Deletion | Chr2 | 22703043 | 22703046 | 3 | LOC_Os02g37620 |
Deletion | Chr11 | 23610755 | 23610774 | 19 | |
Deletion | Chr2 | 25002560 | 25002564 | 4 | |
Deletion | Chr4 | 30834686 | 30834687 | 1 | |
Deletion | Chr1 | 33181201 | 33181203 | 2 | |
Deletion | Chr1 | 34805621 | 34805626 | 5 | |
Deletion | Chr3 | 35530035 | 35530038 | 3 | LOC_Os03g62800 |
Insertions: 10
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr11 | 8509693 | 9388645 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 8509708 | Chr3 | 31143110 | |
Translocation | Chr8 | 21503705 | Chr3 | 22207230 | 2 |
Translocation | Chr6 | 28350081 | Chr3 | 22207230 | LOC_Os06g46670 |