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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14561965	G-A	HET	INTERGENIC
SBS	Chr1	30221387	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g52560
SBS	Chr1	31330697	C-T	HET	INTERGENIC
SBS	Chr1	6833809	G-A	HOMO	INTRON
SBS	Chr1	8591874	A-T	HET	INTERGENIC
SBS	Chr11	19876092	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g34020
SBS	Chr2	9649666	C-T	HET	INTERGENIC
SBS	Chr3	17211521	T-C	HET	INTERGENIC
SBS	Chr3	21566837	A-G	HET	INTRON
SBS	Chr3	23951352	C-T	HET	UTR_3_PRIME
SBS	Chr3	31647636	C-A	HET	INTERGENIC
SBS	Chr3	9574442	T-C	HET	INTERGENIC
SBS	Chr4	18102285	A-T	HET	INTERGENIC
SBS	Chr5	20542035	T-C	HET	INTERGENIC
SBS	Chr5	23733713	T-C	HET	INTRON
SBS	Chr7	20634145	T-A	HET	INTERGENIC
SBS	Chr7	21325786	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g35620
SBS	Chr7	25102414	T-A	HOMO	INTRON
SBS	Chr8	12232483	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20359
SBS	Chr9	11233496	C-T	HET	INTERGENIC
SBS	Chr9	22829788	G-T	HOMO	SYNONYMOUS_CODING

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1062144	1062150	6
Deletion	Chr11	1069382	1069396	14
Deletion	Chr8	2017801	2017819	18
Deletion	Chr11	2057366	2057370	4	LOC_Os11g04830
Deletion	Chr1	6372374	6372375	1
Deletion	Chr2	9050292	9050304	12
Deletion	Chr9	9934113	9934125	12
Deletion	Chr2	10941263	10941264	1	LOC_Os02g18770
Deletion	Chr9	11346280	11346302	22
Deletion	Chr10	12475934	12475935	1
Deletion	Chr6	15973120	15973122	2
Deletion	Chr5	16082910	16082911	1
Deletion	Chr7	16442661	16442662	1
Deletion	Chr11	17287331	17287339	8
Deletion	Chr1	17587627	17587642	15
Deletion	Chr1	17618925	17618927	2
Deletion	Chr1	19990841	19990842	1
Deletion	Chr3	20554765	20554776	11
Deletion	Chr2	22703043	22703046	3	LOC_Os02g37620
Deletion	Chr11	23610755	23610774	19
Deletion	Chr2	25002560	25002564	4
Deletion	Chr4	30834686	30834687	1
Deletion	Chr1	33181201	33181203	2
Deletion	Chr1	34805621	34805626	5
Deletion	Chr3	35530035	35530038	3	LOC_Os03g62800

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	33502491	33502491	1
Insertion	Chr1	3367663	3367757	95
Insertion	Chr11	17890746	17890787	42
Insertion	Chr11	18768718	18768719	2
Insertion	Chr3	31628502	31628503	2
Insertion	Chr4	30834863	30834863	1
Insertion	Chr5	11844916	11844918	3
Insertion	Chr7	24535238	24535240	3
Insertion	Chr8	10135592	10135625	34
Insertion	Chr8	12206491	12206491	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8509693	9388645

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	8509708	Chr3	31143110
Translocation	Chr8	21503705	Chr3	22207230	2
Translocation	Chr6	28350081	Chr3	22207230	LOC_Os06g46670

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