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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7916067	A-T	HET	INTERGENIC
SBS	Chr1	8104621	T-A	HET	INTERGENIC
SBS	Chr10	12608875	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24560
SBS	Chr11	2728100	G-A	HOMO	INTERGENIC
SBS	Chr11	6353512	A-C	HET	INTERGENIC
SBS	Chr12	12664634	G-A	HOMO	INTERGENIC
SBS	Chr12	14169448	C-T	HOMO	STOP_GAINED	LOC_Os12g24710
SBS	Chr12	15356722	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26310
SBS	Chr12	1925315	C-T	HOMO	INTRON
SBS	Chr12	3897800	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g07750
SBS	Chr2	11000354	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g18850
SBS	Chr2	14436034	G-A	HET	INTERGENIC
SBS	Chr2	190421	C-T	HET	INTRON
SBS	Chr2	20737756	T-C	HET	INTERGENIC
SBS	Chr2	25910004	G-A	HET	UTR_3_PRIME
SBS	Chr2	29378067	T-C	HOMO	INTRON
SBS	Chr3	19192734	G-A	HOMO	INTERGENIC
SBS	Chr3	21832661	C-G	HET	INTERGENIC
SBS	Chr4	11333295	T-C	HET	INTERGENIC
SBS	Chr4	23590496	T-C	HET	INTERGENIC
SBS	Chr4	4805560	T-A	HET	INTERGENIC
SBS	Chr5	27597779	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g48140
SBS	Chr5	4794471	C-T	HET	INTERGENIC
SBS	Chr5	6483681	G-A	HET	INTERGENIC
SBS	Chr6	10131089	C-A	HET	SYNONYMOUS_CODING
SBS	Chr6	21146951	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g36140
SBS	Chr6	24124976	T-A	HET	INTERGENIC
SBS	Chr6	24180715	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	3902454	A-G	HET	INTRON
SBS	Chr6	3902465	T-A	HET	INTRON
SBS	Chr7	10633766	A-T	HET	INTERGENIC
SBS	Chr7	18022540	C-G	HET	INTERGENIC
SBS	Chr7	22710315	G-A	HET	INTERGENIC
SBS	Chr8	7516616	T-C	HOMO	INTERGENIC
SBS	Chr9	18804216	C-T	HET	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1031110	1031111	1
Deletion	Chr8	1932671	1932672	1
Deletion	Chr1	2335893	2335894	1
Deletion	Chr12	4856637	4856638	1
Deletion	Chr9	4874595	4874597	2
Deletion	Chr4	5340001	5370000	29999	5
Deletion	Chr9	5716599	5716609	10
Deletion	Chr1	5780664	5780666	2
Deletion	Chr11	6047809	6047810	1
Deletion	Chr4	6696262	6696263	1	LOC_Os04g12150
Deletion	Chr6	9222001	9348000	125999	17
Deletion	Chr6	9547992	9548001	9
Deletion	Chr6	9601040	9601053	13
Deletion	Chr6	9771001	9786000	14999	LOC_Os06g16919
Deletion	Chr6	9802001	9956000	153999	24
Deletion	Chr6	9987001	10095000	107999	16
Deletion	Chr2	10851132	10851133	1
Deletion	Chr3	12267469	12267486	17
Deletion	Chr3	12340397	12340399	2
Deletion	Chr7	13176878	13176882	4
Deletion	Chr5	15242768	15242769	1
Deletion	Chr8	15544411	15544416	5
Deletion	Chr9	18156689	18156690	1	LOC_Os09g29850
Deletion	Chr8	18275080	18275083	3
Deletion	Chr10	18349758	18349759	1
Deletion	Chr10	20238493	20238496	3	LOC_Os10g37810
Deletion	Chr12	20389415	20389416	1
Deletion	Chr5	20603985	20604001	16
Deletion	Chr10	20809401	20809402	1
Deletion	Chr10	20984552	20984562	10
Deletion	Chr7	21545593	21545599	6
Deletion	Chr7	23109522	23109526	4
Deletion	Chr4	25681001	25706000	24999	2
Deletion	Chr1	25816251	25816252	1
Deletion	Chr2	28355994	28355996	2

Insertions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15865031	15865037	7
Insertion	Chr1	23475349	23475349	1
Insertion	Chr1	28275230	28275233	4
Insertion	Chr1	9031972	9031972	1
Insertion	Chr10	1301765	1301768	4
Insertion	Chr10	1416699	1416699	1
Insertion	Chr11	3211068	3211070	3
Insertion	Chr12	22456048	22456050	3
Insertion	Chr2	9205518	9205519	2
Insertion	Chr3	30018014	30018052	39
Insertion	Chr4	16556872	16556919	48
Insertion	Chr4	19731904	19731908	5	LOC_Os04g32730
Insertion	Chr4	23013617	23013617	1
Insertion	Chr4	5944437	5944452	16
Insertion	Chr5	12293134	12293134	1
Insertion	Chr6	9753636	9753636	1
Insertion	Chr7	24289012	24289013	2
Insertion	Chr7	8338880	8338881	2
Insertion	Chr8	2824391	2824391	1	LOC_Os08g05360
Insertion	Chr8	6625934	6625934	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5338246	6073640	LOC_Os04g11170
Inversion	Chr4	26481779	26636639
Inversion	Chr4	26532270	26636634

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1840332	Chr3	30508219
Translocation	Chr8	5280456	Chr4	5419644	LOC_Os04g10050
Translocation	Chr8	5280458	Chr4	5419893	LOC_Os04g10050

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