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Mutant Information

Mutant Name	FN2953-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2953-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18744728	C-T	HET	INTERGENIC
SBS	Chr1	40969287	G-T	HET	INTRON
SBS	Chr1	4354068	T-C	HET	INTRON
SBS	Chr1	9889000	C-A	HOMO	UTR_3_PRIME
SBS	Chr10	22045490	G-C	HOMO	INTERGENIC
SBS	Chr11	19662770	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g33260
SBS	Chr11	19662771	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g33260
SBS	Chr11	20473362	A-G	HET	INTERGENIC
SBS	Chr11	21578809	C-A	HET	INTERGENIC
SBS	Chr11	8360747	G-A	HET	INTERGENIC
SBS	Chr11	8717928	T-A	HET	INTERGENIC
SBS	Chr12	11216461	C-T	HET	INTERGENIC
SBS	Chr2	22168813	C-T	HOMO	INTERGENIC
SBS	Chr2	22383688	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g37050
SBS	Chr2	30370446	C-T	HOMO	INTERGENIC
SBS	Chr2	32042403	A-T	HOMO	INTRON
SBS	Chr3	24152622	A-T	HET	INTERGENIC
SBS	Chr3	29958279	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g52180
SBS	Chr4	13620641	G-T	HET	INTRON
SBS	Chr4	19682000	A-T	HET	UTR_3_PRIME
SBS	Chr4	25905146	C-T	HET	INTERGENIC
SBS	Chr6	15173825	C-T	HET	INTERGENIC
SBS	Chr7	12494071	T-C	HOMO	INTERGENIC
SBS	Chr8	12971336	G-C	HOMO	INTRON
SBS	Chr9	8131888	C-T	HET	INTERGENIC
SBS	Chr9	8220863	C-T	HOMO	INTERGENIC

Deletions: 63

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	311478	311489	11
Deletion	Chr2	354839	354840	1
Deletion	Chr10	1255092	1255093	1
Deletion	Chr8	1441919	1441920	1	LOC_Os08g03140
Deletion	Chr12	2117055	2117056	1	LOC_Os12g04920
Deletion	Chr4	2857915	2857916	1
Deletion	Chr9	2858400	2858405	5
Deletion	Chr4	3248445	3248446	1
Deletion	Chr4	5510393	5510411	18	LOC_Os04g10190
Deletion	Chr10	5525714	5525719	5
Deletion	Chr10	5527876	5527877	1
Deletion	Chr8	5871009	5871012	3	LOC_Os08g10120
Deletion	Chr8	6378823	6378824	1
Deletion	Chr8	6395379	6395380	1
Deletion	Chr8	6973838	6973839	1
Deletion	Chr3	7071576	7071577	1
Deletion	Chr2	7642001	7829000	186999	23
Deletion	Chr9	7860427	7860466	39
Deletion	Chr8	8439030	8439031	1
Deletion	Chr8	8740457	8740460	3
Deletion	Chr6	9104038	9104040	2
Deletion	Chr4	9253948	9253949	1
Deletion	Chr11	9268246	9268250	4
Deletion	Chr4	10481899	10481900	1
Deletion	Chr7	12249760	12249761	1
Deletion	Chr12	12333270	12333273	3
Deletion	Chr1	13632947	13632948	1
Deletion	Chr4	13744715	13744727	12	LOC_Os04g24060
Deletion	Chr1	14291369	14291379	10
Deletion	Chr11	14447008	14447009	1
Deletion	Chr2	14519494	14519495	1
Deletion	Chr12	14852262	14852281	19
Deletion	Chr8	15302134	15302138	4
Deletion	Chr12	15598351	15598365	14
Deletion	Chr2	15666557	15666558	1
Deletion	Chr3	15859712	15859714	2
Deletion	Chr9	16373266	16373269	3
Deletion	Chr11	16724643	16724644	1
Deletion	Chr1	16939636	16939645	9	LOC_Os01g30990
Deletion	Chr8	17046460	17046461	1
Deletion	Chr12	17996187	17996188	1	LOC_Os12g30050
Deletion	Chr8	18970871	18970895	24	LOC_Os08g30750
Deletion	Chr6	19641970	19641971	1
Deletion	Chr1	19809425	19809447	22
Deletion	Chr12	20240099	20240100	1
Deletion	Chr5	20358272	20358273	1
Deletion	Chr11	20479001	20582000	102999	15
Deletion	Chr9	21444277	21444278	1
Deletion	Chr3	21462544	21462545	1
Deletion	Chr12	22111606	22111609	3
Deletion	Chr11	22525106	22525107	1
Deletion	Chr2	22614136	22614148	12
Deletion	Chr12	22805945	22805962	17
Deletion	Chr5	24373217	24373239	22
Deletion	Chr8	24581001	24647000	65999	11
Deletion	Chr4	26413536	26413537	1
Deletion	Chr8	27201448	27201456	8
Deletion	Chr11	27293985	27293986	1
Deletion	Chr1	27436600	27436601	1
Deletion	Chr4	28947850	28947856	6
Deletion	Chr5	29849533	29849887	354
Deletion	Chr3	34749902	34749904	2
Deletion	Chr1	43264101	43264108	7

Insertions: 48

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11390065	11390065	1
Insertion	Chr1	15683389	15683486	98
Insertion	Chr1	35974726	35974730	5
Insertion	Chr10	15056605	15056605	1
Insertion	Chr10	15151619	15151641	23	LOC_Os10g29090
Insertion	Chr10	3209977	3209977	1
Insertion	Chr10	749754	749754	1	LOC_Os10g02180
Insertion	Chr10	7669829	7669875	47
Insertion	Chr10	8724646	8724646	1
Insertion	Chr11	21228297	21228297	1
Insertion	Chr12	11840819	11840864	46
Insertion	Chr12	14426298	14426299	2
Insertion	Chr12	16231854	16231854	1
Insertion	Chr12	23764592	23764684	93
Insertion	Chr12	4584502	4584507	6
Insertion	Chr12	5156788	5156789	2
Insertion	Chr2	11908506	11908506	1
Insertion	Chr2	13728134	13728134	1
Insertion	Chr3	13532182	13532182	1
Insertion	Chr3	24089602	24089603	2
Insertion	Chr4	24450085	24450085	1
Insertion	Chr4	26164892	26164893	2
Insertion	Chr4	3332318	3332319	2
Insertion	Chr4	33350031	33350031	1
Insertion	Chr4	7551233	7551335	103
Insertion	Chr4	8027137	8027137	1
Insertion	Chr4	8576183	8576185	3
Insertion	Chr4	8745059	8745064	6
Insertion	Chr4	9840807	9840807	1
Insertion	Chr5	11556600	11556600	1
Insertion	Chr5	27014414	27014414	1
Insertion	Chr5	29411363	29411404	42
Insertion	Chr5	29536988	29536990	3
Insertion	Chr5	4919066	4919066	1
Insertion	Chr5	9930890	9930891	2
Insertion	Chr6	22187968	22187968	1
Insertion	Chr6	22679281	22679373	93
Insertion	Chr7	13577283	13577283	1
Insertion	Chr7	27613461	27613462	2
Insertion	Chr8	16867262	16867262	1
Insertion	Chr8	5509500	5509500	1
Insertion	Chr8	6459106	6459195	90
Insertion	Chr8	6945198	6945198	1
Insertion	Chr8	6973635	6973636	2
Insertion	Chr9	12053404	12053404	1
Insertion	Chr9	12953844	12953848	5
Insertion	Chr9	4514786	4514869	84	LOC_Os09g08630
Insertion	Chr9	9845550	9845550	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	19147967	19888647
Inversion	Chr11	20481894	20813279

Translocations: 19

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4009896	Chr6	23504877
Translocation	Chr9	5190823	Chr6	8717945
Translocation	Chr10	7047390	Chr1	36582409
Translocation	Chr10	11149694	Chr9	9850710
Translocation	Chr12	11421780	Chr1	42198377
Translocation	Chr12	11422019	Chr1	42198373
Translocation	Chr11	12004248	Chr10	2306195
Translocation	Chr9	13620982	Chr4	7872859
Translocation	Chr8	15935206	Chr7	6242593
Translocation	Chr11	18148243	Chr6	6320469
Translocation	Chr11	18250795	Chr1	26330533
Translocation	Chr7	19888661	Chr6	1555753
Translocation	Chr7	19888811	Chr6	1555752
Translocation	Chr11	20281824	Chr2	13966343	LOC_Os02g24100
Translocation	Chr7	20707332	Chr6	518657
Translocation	Chr6	23392560	Chr2	20261349
Translocation	Chr11	24445386	Chr4	29686988	2
Translocation	Chr8	24645782	Chr7	19888832
Translocation	Chr3	32039583	Chr2	5535368

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