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| Mutant Information |
|---|
| Mutant Name | FN302-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN302-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12275622 | A-G | HET | INTERGENIC | |
| SBS | Chr10 | 10418109 | G-A | HET | INTRON | |
| SBS | Chr10 | 12563641 | A-G | HET | INTERGENIC | |
| SBS | Chr10 | 13077029 | T-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 13850170 | C-A | HET | INTERGENIC | |
| SBS | Chr11 | 8857030 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 12760847 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 10017659 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 17306972 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 28936508 | T-C | HET | INTRON | |
| SBS | Chr3 | 20126484 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 24114584 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 36180964 | C-A | HET | INTRON | |
| SBS | Chr4 | 21406274 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 33752387 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 4707035 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 4707037 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 4707038 | G-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 10285219 | G-A | HOMO | INTRON | |
| SBS | Chr6 | 11866674 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 13778068 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g23630 |
| SBS | Chr6 | 16137509 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 4226538 | A-G | HET | INTRON | |
| SBS | Chr7 | 17387637 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 3047703 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 5723407 | A-C | HET | INTRON | |
| SBS | Chr8 | 953485 | G-T | HET | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 4215525 | 4215536 | 11 | |
| Deletion | Chr11 | 4291902 | 4291903 | 1 | |
| Deletion | Chr2 | 4977272 | 4977276 | 4 | |
| Deletion | Chr1 | 8143309 | 8143310 | 1 | |
| Deletion | Chr12 | 8459840 | 8459842 | 2 | |
| Deletion | Chr7 | 8897049 | 8897076 | 27 | |
| Deletion | Chr10 | 10651751 | 10651752 | 1 | |
| Deletion | Chr5 | 14782658 | 14782659 | 1 | |
| Deletion | Chr5 | 14797160 | 14797172 | 12 | LOC_Os05g25450 |
| Deletion | Chr10 | 16348380 | 16348384 | 4 | |
| Deletion | Chr7 | 17371830 | 17371836 | 6 | |
| Deletion | Chr6 | 17953221 | 17953225 | 4 | |
| Deletion | Chr4 | 21416085 | 21416093 | 8 | |
| Deletion | Chr4 | 22054063 | 22054064 | 1 | |
| Deletion | Chr11 | 23868604 | 23868605 | 1 | |
| Deletion | Chr4 | 24453265 | 24453266 | 1 | |
| Deletion | Chr6 | 30228068 | 30228072 | 4 | |
| Deletion | Chr2 | 33468691 | 33468692 | 1 | |
| Deletion | Chr3 | 36150364 | 36150366 | 2 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 42960941 | 42960963 | 23 | |
| Insertion | Chr2 | 17124626 | 17124629 | 4 | |
| Insertion | Chr4 | 2509855 | 2509855 | 1 | |
| Insertion | Chr8 | 24721344 | 24721345 | 2 |
No Inversion
No Translocation