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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1342320	G-T	Homo
SBS	Chr1	16982112	A-C	Homo
SBS	Chr1	18036535	A-G	Homo
SBS	Chr1	7044659	C-T	HET
SBS	Chr10	15424154	G-A	HET
SBS	Chr11	11828450	G-A	HET
SBS	Chr11	12896705	G-C	Homo
SBS	Chr11	15403936	A-G	Homo
SBS	Chr11	23619690	A-G	Homo
SBS	Chr11	3937123	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g07720
SBS	Chr12	11718671	C-T	HET
SBS	Chr12	16727249	C-T	HET
SBS	Chr12	17466501	C-A	HET
SBS	Chr12	17466502	C-T	HET
SBS	Chr12	19672306	T-C	HET
SBS	Chr2	10675951	C-A	HET
SBS	Chr2	12911043	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g21720
SBS	Chr2	14841066	G-C	HET
SBS	Chr2	3579220	G-A	Homo
SBS	Chr2	35892603	G-A	HET
SBS	Chr3	17068073	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g29950
SBS	Chr3	17660041	G-A	Homo
SBS	Chr4	21439017	T-C	HET
SBS	Chr4	3088383	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g05960
SBS	Chr4	3829422	A-G	Homo
SBS	Chr5	20918215	A-T	Homo
SBS	Chr5	21968534	G-A	Homo
SBS	Chr5	28714530	C-T	Homo
SBS	Chr6	14618369	G-A	HET
SBS	Chr6	22397939	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g37840
SBS	Chr6	22397942	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g37840
SBS	Chr6	28634308	C-T	HET
SBS	Chr8	4115814	T-C	Homo
SBS	Chr8	6917510	C-T	Homo
SBS	Chr8	93559	T-C	HET
SBS	Chr9	111185	C-T	HET
SBS	Chr9	15924947	G-A	HET
SBS	Chr9	3528595	G-A	Homo
SBS	Chr9	6043835	A-T	HET
SBS	Chr9	8966369	C-A	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2471813	2471822	9
Deletion	Chr7	6198660	6198664	4
Deletion	Chr1	10947461	10947499	38
Deletion	Chr8	13572683	13572684	1	LOC_Os08g22540
Deletion	Chr12	13669001	13692000	22999	2
Deletion	Chr12	13935849	13935883	34
Deletion	Chr8	16993657	16993660	3
Deletion	Chr8	17719201	17719203	2
Deletion	Chr11	21610330	21610335	5
Deletion	Chr8	23307478	23307480	2
Deletion	Chr2	24556414	24556415	1
Deletion	Chr1	27201123	27201127	4
Deletion	Chr5	29235259	29235260	1
Deletion	Chr3	30230055	30230059	4	LOC_Os03g52730
Deletion	Chr2	33747946	33747955	9
Deletion	Chr1	40630987	40630988	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1213455	1213460	6
Insertion	Chr1	2867948	2867948	1
Insertion	Chr2	14476615	14476615	1
Insertion	Chr3	23674589	23674589	1
Insertion	Chr8	17916507	17916507	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	20467043	20807548	2
Inversion	Chr12	20467048	20807572	2
Inversion	Chr4	26524337	27000780	LOC_Os04g44800
Inversion	Chr4	26524347	27000782	LOC_Os04g44800

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6225525	Chr5	16255670	2
Translocation	Chr11	7078606	Chr7	17406960	2
Translocation	Chr11	9175583	Chr8	26515265
Translocation	Chr9	9765975	Chr2	6851936
Translocation	Chr8	10108741	Chr6	18097953	LOC_Os08g16490
Translocation	Chr7	12937289	Chr1	36983547	2
Translocation	Chr7	12938518	Chr1	36838665	LOC_Os07g22960
Translocation	Chr12	13348683	Chr6	22360281	2
Translocation	Chr8	13525340	Chr6	23975350	2
Translocation	Chr12	18685467	Chr6	12042248
Translocation	Chr8	21343840	Chr5	25386618	LOC_Os08g34060
Translocation	Chr8	21343964	Chr5	25386615	LOC_Os08g34060

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