Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20399787	G-T	Homo
SBS	Chr1	249474	A-G	Homo
SBS	Chr1	7216925	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g13000
SBS	Chr10	11241930	G-A	Homo
SBS	Chr10	13593909	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g26250
SBS	Chr11	14958841	G-A	HET
SBS	Chr11	14958842	C-T	HET
SBS	Chr2	10760346	T-G	HET
SBS	Chr2	18918457	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g32030
SBS	Chr2	19263697	C-A	HET
SBS	Chr2	24514837	C-T	Homo
SBS	Chr2	30665743	A-T	HET
SBS	Chr2	33676124	G-A	HET
SBS	Chr2	7731794	C-T	Homo
SBS	Chr2	7731796	A-G	Homo
SBS	Chr3	1198810	G-T	HET
SBS	Chr3	14577067	C-T	HET
SBS	Chr3	28385624	A-T	HET
SBS	Chr3	5815921	G-A	HET
SBS	Chr4	19077899	G-A	HET
SBS	Chr4	23424177	T-A	HET
SBS	Chr4	2358725	G-A	HET
SBS	Chr4	9898957	C-A	Homo
SBS	Chr6	11649966	T-C	Homo
SBS	Chr6	21806860	T-A	Homo
SBS	Chr6	27134937	C-T	Homo
SBS	Chr6	4799515	A-T	HET
SBS	Chr6	6286294	T-C	HET
SBS	Chr6	8471915	T-A	Homo
SBS	Chr7	10769305	C-T	HET
SBS	Chr7	13935676	G-A	HET
SBS	Chr7	25637548	T-C	HET
SBS	Chr7	28106632	A-G	HET
SBS	Chr7	5069628	C-T	Homo
SBS	Chr7	6421223	G-A	HET
SBS	Chr8	2053504	C-T	HET
SBS	Chr8	4834974	A-T	HET
SBS	Chr9	19133168	C-T	Homo
SBS	Chr9	19220275	G-T	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2861746	2861770	24	LOC_Os08g05420
Deletion	Chr7	3543587	3543590	3
Deletion	Chr10	5408001	5408006	5
Deletion	Chr11	9975804	9975812	8
Deletion	Chr6	11190421	11190422	1
Deletion	Chr1	12754169	12754171	2
Deletion	Chr6	12969788	12969797	9
Deletion	Chr3	13471854	13471855	1
Deletion	Chr10	17922061	17922063	2
Deletion	Chr1	20823953	20823955	2
Deletion	Chr3	23363079	23363083	4
Deletion	Chr6	26130425	26130432	7
Deletion	Chr3	32791001	32835000	43999	9

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	11558331	11558332	2
Insertion	Chr12	10369028	10369029	2
Insertion	Chr12	21982395	21982395	1
Insertion	Chr5	10289552	10289552	1
Insertion	Chr6	20150242	20150247	6	LOC_Os06g34670
Insertion	Chr7	26050219	26050220	2
Insertion	Chr9	15193103	15193104	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9449278	9704548
Inversion	Chr10	9449284	9704556
Inversion	Chr6	22482809	22521603
Inversion	Chr2	30035899	30054857	2
Inversion	Chr2	30035902	30054861	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	105033	Chr1	39997841
Translocation	Chr10	2263662	Chr8	17404895
Translocation	Chr12	7742402	Chr2	19414037	2
Translocation	Chr8	15015619	Chr6	14816504	LOC_Os08g24810
Translocation	Chr11	22546086	Chr2	19802224
Translocation	Chr2	22702345	Chr1	11397326
Translocation	Chr11	28691077	Chr9	373757	2

Main menu