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| Mutant Information |
|---|
| Mutant Name | FN3090-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3090-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 27233991 | T-C | Homo | ||
| SBS | Chr1 | 33051924 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g57210 |
| SBS | Chr1 | 42547663 | T-C | HET | START_LOST | LOC_Os01g73420 |
| SBS | Chr1 | 42986631 | A-G | HET | ||
| SBS | Chr10 | 18941317 | C-T | Homo | ||
| SBS | Chr11 | 10077790 | A-C | Homo | ||
| SBS | Chr11 | 1016702 | G-T | HET | ||
| SBS | Chr2 | 18738977 | A-G | HET | ||
| SBS | Chr2 | 33158052 | G-A | HET | ||
| SBS | Chr3 | 11945542 | C-G | Homo | ||
| SBS | Chr3 | 12222116 | A-G | Homo | ||
| SBS | Chr3 | 127387 | G-A | Homo | ||
| SBS | Chr3 | 21678625 | T-C | HET | ||
| SBS | Chr3 | 24521464 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g43800 |
| SBS | Chr5 | 10330655 | C-A | Homo | ||
| SBS | Chr5 | 15238877 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g26180 |
| SBS | Chr6 | 20926347 | G-A | HET | ||
| SBS | Chr6 | 3010496 | C-A | Homo | ||
| SBS | Chr6 | 712581 | A-G | Homo | ||
| SBS | Chr7 | 24898227 | C-T | HET | ||
| SBS | Chr7 | 3212320 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g06610 |
| SBS | Chr8 | 27386256 | T-A | HET | ||
| SBS | Chr9 | 20387607 | C-A | Homo | ||
| SBS | Chr9 | 21768244 | C-A | Homo | ||
| SBS | Chr9 | 2891146 | C-A | HET | ||
| SBS | Chr9 | 6638554 | G-C | HET |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 73648 | 74002 | 354 | |
| Deletion | Chr8 | 5968256 | 5968260 | 4 | |
| Deletion | Chr4 | 6163400 | 6163404 | 4 | |
| Deletion | Chr4 | 12475536 | 12475537 | 1 | |
| Deletion | Chr11 | 23790253 | 23790258 | 5 | |
| Deletion | Chr1 | 26369150 | 26369156 | 6 | |
| Deletion | Chr2 | 31100801 | 31100808 | 7 | LOC_Os02g50880 |
Insertions: 5
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 2444085 | 2536214 | LOC_Os03g05020 |
| Inversion | Chr3 | 2444351 | 2536226 | LOC_Os03g05020 |
| Inversion | Chr12 | 11983933 | 11989729 | |
| Inversion | Chr4 | 31586631 | 31632593 | 2 |
| Inversion | Chr4 | 31586639 | 31632600 | 2 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 10540260 | Chr5 | 29777448 | |
| Translocation | Chr8 | 16611461 | Chr1 | 14561814 | LOC_Os08g27190 |
| Translocation | Chr6 | 17874850 | Chr5 | 12666964 | |
| Translocation | Chr12 | 23236478 | Chr9 | 10734173 | 2 |