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Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11950963	C-T	HET
SBS	Chr1	12698015	T-A	HET
SBS	Chr1	12724036	G-T	HET
SBS	Chr1	21939212	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39020
SBS	Chr1	30436713	C-T	Homo
SBS	Chr1	3216372	G-A	HET
SBS	Chr1	33670341	G-A	Homo
SBS	Chr1	3446501	T-C	HET
SBS	Chr1	37934840	A-G	HET
SBS	Chr1	39249808	G-A	HET
SBS	Chr10	15506178	T-A	Homo
SBS	Chr10	614129	A-G	Homo
SBS	Chr10	754040	A-G	Homo
SBS	Chr10	754051	A-G	Homo
SBS	Chr11	10286058	G-A	Homo
SBS	Chr11	13102071	G-A	HET
SBS	Chr12	14498624	T-C	Homo
SBS	Chr12	2183457	C-T	HET
SBS	Chr12	26835019	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g43230
SBS	Chr2	1298553	G-A	HET	SPLICE_SITE_ACCEPTOR	LOC_Os02g03240
SBS	Chr2	30204504	A-C	HET
SBS	Chr2	31738866	T-A	HET
SBS	Chr2	3852592	C-T	HET
SBS	Chr3	14219913	T-A	HET
SBS	Chr3	24271710	C-T	HET
SBS	Chr3	30979550	G-A	HET
SBS	Chr3	31804952	A-T	HET
SBS	Chr3	32774982	A-T	HET
SBS	Chr4	10502163	A-T	HET	STOP_GAINED	LOC_Os04g18884
SBS	Chr4	27901447	G-C	Homo
SBS	Chr4	3958006	A-C	HET
SBS	Chr4	4968331	A-T	HET
SBS	Chr5	7214283	G-C	HET
SBS	Chr6	15027955	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25730
SBS	Chr6	27240716	A-G	Homo
SBS	Chr6	29505563	G-A	Homo
SBS	Chr6	4909959	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g09650
SBS	Chr7	26934533	C-T	HET
SBS	Chr8	13040340	G-A	HET
SBS	Chr8	7579352	T-A	HET
SBS	Chr9	21378480	G-A	HET
SBS	Chr9	6812314	T-G	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	783884	783892	8
Deletion	Chr11	1438001	1541000	102999	17
Deletion	Chr6	2904870	2904872	2
Deletion	Chr3	12752001	12786000	33999	7
Deletion	Chr9	17958988	17958993	5
Deletion	Chr2	18860381	18860382	1
Deletion	Chr11	18955302	18955304	2
Deletion	Chr11	21098001	21107000	8999	2
Deletion	Chr12	21586458	21586465	7
Deletion	Chr8	22162640	22162641	1
Deletion	Chr2	29566001	29583000	16999	LOC_Os02g48320
Deletion	Chr2	33733933	33733944	11
Deletion	Chr1	38400213	38400215	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	8368902	8368902	1
Insertion	Chr5	5234037	5234037	1
Insertion	Chr9	4160493	4160518	26

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1246392	1497430	LOC_Os02g03130
Inversion	Chr2	1246401	1497436	LOC_Os02g03130
Inversion	Chr2	8936797	8937618	LOC_Os02g15810
Inversion	Chr6	24302592	24408171
Inversion	Chr7	26557974	27379636	LOC_Os07g44460
Inversion	Chr7	26561030	27396118	2
Inversion	Chr2	29566257	29836730	2

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	8937306	Chr1	8796234	2
Translocation	Chr2	8958434	Chr1	8796893	2
Translocation	Chr8	12010942	Chr7	12645576	2
Translocation	Chr3	12737380	Chr1	15903698	2
Translocation	Chr2	12757312	Chr1	38645012	2
Translocation	Chr8	15145221	Chr6	27239858	LOC_Os08g24980
Translocation	Chr6	23358762	Chr1	15903707	2
Translocation	Chr6	23359415	Chr3	12746207
Translocation	Chr6	23540021	Chr2	8937307
Translocation	Chr6	24302595	Chr2	32926349
Translocation	Chr6	24408172	Chr2	32915130
Translocation	Chr11	27311127	Chr10	7352511

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