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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12980255	C-T	HET	INTERGENIC
SBS	Chr1	21600720	G-A	HET	INTERGENIC
SBS	Chr1	33909358	G-A	HOMO	INTRON
SBS	Chr2	4831052	T-A	HET	INTERGENIC
SBS	Chr2	7007985	T-A	HET	INTRON
SBS	Chr2	16342644	C-T	HET	INTERGENIC
SBS	Chr3	284468	C-A	HOMO	INTERGENIC
SBS	Chr3	30759293	G-A	HET	INTERGENIC
SBS	Chr5	1834985	G-A	HET	INTERGENIC
SBS	Chr5	3715097	T-C	HET	INTERGENIC
SBS	Chr5	3984727	C-T	HET	INTERGENIC
SBS	Chr5	3984728	C-T	HET	INTERGENIC
SBS	Chr5	10279717	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17880
SBS	Chr5	13437287	A-G	HOMO	INTERGENIC
SBS	Chr6	25325330	T-G	HET	INTERGENIC
SBS	Chr6	27974374	C-T	HET	INTERGENIC
SBS	Chr7	8716231	A-G	HET	INTERGENIC
SBS	Chr8	2686952	C-T	HOMO	INTERGENIC
SBS	Chr8	15759175	G-A	HET	INTERGENIC
SBS	Chr8	23173134	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	5223806	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09680
SBS	Chr9	11348548	G-C	HOMO	SYNONYMOUS_CODING
SBS	Chr9	19900906	A-C	HET	UTR_3_PRIME
SBS	Chr10	10687866	T-A	HET	INTRON
SBS	Chr10	10687867	C-T	HET	INTRON
SBS	Chr11	1506084	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	41672	41673	1
Deletion	Chr4	3503031	3503041	10
Deletion	Chr9	4637001	4674000	36999	6
Deletion	Chr10	4915305	4915314	9
Deletion	Chr11	5831539	5831540	1
Deletion	Chr4	11018544	11018545	1	LOC_Os04g19720
Deletion	Chr8	13515170	13515171	1
Deletion	Chr11	16829744	16829747	3
Deletion	Chr1	16856183	16856184	1
Deletion	Chr3	17283551	17283558	7
Deletion	Chr6	20638035	20638042	7	LOC_Os06g35410
Deletion	Chr12	23217879	23217880	1
Deletion	Chr12	24334382	24334391	9
Deletion	Chr12	24563119	24563128	9
Deletion	Chr12	25229926	25229933	7
Deletion	Chr2	25290365	25290366	1
Deletion	Chr5	27259001	27278000	18999	4
Deletion	Chr4	27358118	27358119	1
Deletion	Chr3	27905002	27905005	3	LOC_Os03g48990
Deletion	Chr3	34655914	34655915	1

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	38875578	38875579	2
Insertion	Chr3	27422377	27422378	2
Insertion	Chr8	23181519	23181520	2
Insertion	Chr2	23317491	23317491	1
Insertion	Chr2	24758529	24758529	1
Insertion	Chr3	19976716	19976716	1
Insertion	Chr4	3903077	3903077	1
Insertion	Chr4	12162934	12162934	1
Insertion	Chr5	20644144	20644144	1
Insertion	Chr5	26523072	26523073	2
Insertion	Chr5	29697636	29697636	1
Insertion	Chr6	23088669	23088670	2
Insertion	Chr7	14901434	14901434	1
Insertion	Chr7	23030548	23030549	2
Insertion	Chr8	17446884	17446884	1
Insertion	Chr10	13572554	13572554	1
Insertion	Chr11	12120658	12120658	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	27258146	27359698
Inversion	Chr3	31303078	31420148	LOC_Os03g55050
Inversion	Chr3	31303080	31422566	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	7361082	Chr1	31164154
Translocation	Chr8	10034555	Chr4	6704992
Translocation	Chr5	12284708	Chr4	8543092
Translocation	Chr12	12299055	Chr4	35483303	LOC_Os12g21840
Translocation	Chr6	13727780	Chr1	3306882	LOC_Os01g07020
Translocation	Chr6	15250723	Chr2	11538080	LOC_Os02g19720
Translocation	Chr12	19144011	Chr5	18325136
Translocation	Chr4	20219825	Chr2	6539286
Translocation	Chr12	23667320	Chr1	14628633
Translocation	Chr7	24466982	Chr6	28719834	LOC_Os07g40830

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