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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1112265	C-A	HET	INTERGENIC
SBS	Chr1	27276566	T-A	HOMO	INTRON
SBS	Chr1	28624542	A-T	HET	INTERGENIC
SBS	Chr1	506626	C-T	HET	INTERGENIC
SBS	Chr1	8641683	T-G	HET	INTERGENIC
SBS	Chr1	9777693	C-T	HET	INTERGENIC
SBS	Chr10	14197241	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g26960
SBS	Chr11	15755215	C-A	HET	INTERGENIC
SBS	Chr11	7743398	G-T	HET	INTERGENIC
SBS	Chr11	7744070	C-T	HET	INTERGENIC
SBS	Chr12	14606947	T-G	HET	INTERGENIC
SBS	Chr12	24765369	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g40050
SBS	Chr12	5264776	G-T	HET	INTERGENIC
SBS	Chr2	22645233	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g37520
SBS	Chr3	20096641	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36239
SBS	Chr3	22228840	C-A	HET	INTERGENIC
SBS	Chr3	22836914	C-T	HET	INTERGENIC
SBS	Chr3	24757443	T-G	HET	INTERGENIC
SBS	Chr3	31937133	G-C	HET	INTERGENIC
SBS	Chr4	18136626	G-A	HET	INTERGENIC
SBS	Chr4	26814648	A-T	HET	INTERGENIC
SBS	Chr6	20156302	A-T	HET	INTERGENIC
SBS	Chr6	21902605	T-C	HET	INTERGENIC
SBS	Chr6	745099	C-T	HET	INTERGENIC
SBS	Chr7	12620646	C-T	HOMO	INTERGENIC
SBS	Chr8	17314043	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g28390
SBS	Chr8	17696793	T-C	HET	INTERGENIC
SBS	Chr8	9819914	C-T	HET	INTERGENIC
SBS	Chr9	21809206	C-G	HET	INTRON
SBS	Chr9	5411980	C-T	HET	INTERGENIC
SBS	Chr9	7010825	T-A	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	583136	583138	2
Deletion	Chr6	885001	894000	8999	4
Deletion	Chr12	1075736	1075741	5
Deletion	Chr7	1522185	1522196	11
Deletion	Chr7	2538172	2538175	3
Deletion	Chr3	2700755	2700770	15
Deletion	Chr7	3153347	3153364	17
Deletion	Chr9	3486181	3486189	8	LOC_Os09g07140
Deletion	Chr7	5508602	5508614	12	LOC_Os07g10256
Deletion	Chr9	5909904	5909911	7
Deletion	Chr10	6855452	6855453	1
Deletion	Chr8	7628825	7628828	3
Deletion	Chr3	9994509	9994535	26
Deletion	Chr6	12286270	12286273	3
Deletion	Chr9	12649205	12649208	3
Deletion	Chr9	13359298	13359301	3
Deletion	Chr3	19971072	19971083	11	LOC_Os03g36000
Deletion	Chr6	20414001	20479000	64999	9
Deletion	Chr7	24287221	24287222	1
Deletion	Chr3	24743296	24743298	2
Deletion	Chr7	27113974	27113988	14
Deletion	Chr5	29855358	29855712	354
Deletion	Chr3	32641582	32641584	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	5985524	5985524	1
Insertion	Chr5	10732324	10732324	1
Insertion	Chr5	5041661	5041704	44
Insertion	Chr8	20285309	20285320	12
Insertion	Chr9	13453559	13453562	4

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	33430810	33716737	LOC_Os03g58700

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	15954681	Chr6	22030506

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