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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22760753	G-A	HET	INTERGENIC
SBS	Chr1	7144034	G-A	HET	INTERGENIC
SBS	Chr10	17198150	A-G	HOMO	INTERGENIC
SBS	Chr11	11189535	C-T	HET	INTERGENIC
SBS	Chr11	13153141	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22870
SBS	Chr11	23260250	G-A	HET	INTERGENIC
SBS	Chr11	9086054	T-C	HET	INTERGENIC
SBS	Chr11	9522640	C-A	HET	INTRON
SBS	Chr11	9522641	C-A	HET	INTRON
SBS	Chr12	21150401	G-A	HET	INTERGENIC
SBS	Chr12	25773386	A-G	HET	INTERGENIC
SBS	Chr12	9000569	A-T	HET	INTERGENIC
SBS	Chr2	10838677	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g18590
SBS	Chr2	32466739	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g53060
SBS	Chr3	15545178	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g27150
SBS	Chr3	33937927	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g59600
SBS	Chr3	34742395	G-C	HOMO	INTERGENIC
SBS	Chr4	2339457	A-T	HET	INTERGENIC
SBS	Chr4	24991903	G-T	HOMO	INTERGENIC
SBS	Chr5	11300589	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	15983880	C-T	HET	INTERGENIC
SBS	Chr5	8961962	T-A	HET	INTERGENIC
SBS	Chr6	7548773	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g13630
SBS	Chr7	17676075	T-C	HET	INTERGENIC
SBS	Chr7	22680040	G-A	HOMO	INTERGENIC
SBS	Chr8	10421090	G-C	HET	INTERGENIC
SBS	Chr8	19943769	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g32140
SBS	Chr8	19943770	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g32140
SBS	Chr8	19987271	T-A	HOMO	INTRON
SBS	Chr8	23722915	T-C	HET	INTERGENIC
SBS	Chr8	27735664	T-A	HET	INTRON
SBS	Chr9	12928524	G-C	HOMO	INTERGENIC
SBS	Chr9	20423278	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g35540

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	39071	39090	19
Deletion	Chr6	4299116	4299117	1
Deletion	Chr5	4385001	4399000	13999	3
Deletion	Chr5	4402001	4504000	101999	17
Deletion	Chr11	4540580	4540582	2
Deletion	Chr3	4631015	4631023	8
Deletion	Chr2	10851132	10851133	1
Deletion	Chr7	12305397	12305474	77	LOC_Os07g22000
Deletion	Chr9	12954529	12954533	4
Deletion	Chr2	13318712	13318713	1
Deletion	Chr12	14840140	14840144	4
Deletion	Chr2	15551001	15564000	12999	3
Deletion	Chr1	16788197	16788198	1
Deletion	Chr8	17884276	17884280	4
Deletion	Chr2	18426070	18426071	1
Deletion	Chr7	18936645	18936711	66
Deletion	Chr11	18955921	18955923	2
Deletion	Chr2	19683001	20207000	523999	77
Deletion	Chr2	20213001	20405000	191999	17
Deletion	Chr2	20407001	20518000	110999	17
Deletion	Chr2	20529001	20561000	31999	6
Deletion	Chr2	24021363	24021365	2
Deletion	Chr8	24988095	24988098	3
Deletion	Chr6	27791668	27791669	1
Deletion	Chr3	35577562	35577567	5
Deletion	Chr3	36283643	36283647	4	LOC_Os03g64210
Deletion	Chr1	36817241	36817242	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2937965	2937965	1
Insertion	Chr4	10337162	10337162	1
Insertion	Chr4	25956503	25956503	1
Insertion	Chr5	21189414	21189414	1
Insertion	Chr8	24873234	24873234	1
Insertion	Chr8	27255845	27255845	1	LOC_Os08g43110

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4379038	5033664
Inversion	Chr5	5033674	5404076

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1493893	Chr5	10967042	LOC_Os05g18890
Translocation	Chr10	3169145	Chr8	16573963
Translocation	Chr11	5348583	Chr10	19020825
Translocation	Chr12	7267589	Chr6	20611018
Translocation	Chr6	11582952	Chr2	15565012	LOC_Os02g26500
Translocation	Chr10	16676156	Chr6	11570672	2
Translocation	Chr8	17951052	Chr7	27365777
Translocation	Chr5	19226218	Chr4	32449936	LOC_Os04g54560
Translocation	Chr2	20743116	Chr1	2919224
Translocation	Chr4	28579316	Chr1	18061446
Translocation	Chr4	28585784	Chr1	18061442

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