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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28566540	A-T	HOMO	INTERGENIC
SBS	Chr2	7825985	A-G	HET	INTERGENIC
SBS	Chr2	28210316	A-G	HOMO	INTERGENIC
SBS	Chr2	32890447	A-T	HET	INTERGENIC
SBS	Chr2	34059676	G-A	HET	INTERGENIC
SBS	Chr3	6549370	C-T	HOMO	INTERGENIC
SBS	Chr3	14324969	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g25080
SBS	Chr3	19846039	A-G	HOMO	INTERGENIC
SBS	Chr4	5376828	C-A	HOMO	INTERGENIC
SBS	Chr4	10792584	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	12122074	C-T	HOMO	INTERGENIC
SBS	Chr4	15996966	G-A	HOMO	INTRON
SBS	Chr4	24062778	G-T	HET	INTRON
SBS	Chr4	26357228	T-C	HET	INTERGENIC
SBS	Chr4	35274577	T-C	HET	INTRON
SBS	Chr4	35274581	G-A	HET	INTRON
SBS	Chr5	8567704	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15090
SBS	Chr5	11937331	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20360
SBS	Chr5	17243544	C-T	HET	INTERGENIC
SBS	Chr5	27051730	G-A	HET	INTERGENIC
SBS	Chr6	26810844	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g44410
SBS	Chr7	832327	C-T	HET	INTRON
SBS	Chr7	14026266	C-T	HOMO	INTERGENIC
SBS	Chr7	15957797	T-C	HET	INTERGENIC
SBS	Chr8	251515	G-A	HOMO	INTRON
SBS	Chr8	4411673	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr8	11012988	C-T	HOMO	INTERGENIC
SBS	Chr9	3698061	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g07420
SBS	Chr9	16329569	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g26870
SBS	Chr9	18624899	G-A	HET	INTERGENIC
SBS	Chr10	5486005	T-A	HOMO	INTERGENIC
SBS	Chr11	5813184	G-A	HOMO	INTERGENIC
SBS	Chr11	5813185	C-A	HOMO	INTERGENIC
SBS	Chr11	22389569	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	3776312	A-T	HET	INTERGENIC
SBS	Chr12	4375134	C-T	HET	INTERGENIC
SBS	Chr12	23541306	A-G	HET	INTERGENIC
SBS	Chr12	23686766	C-T	HET	INTERGENIC
SBS	Chr12	26505355	G-T	HET	INTERGENIC
SBS	Chr12	26505357	T-C	HET	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	56201	56202	1
Deletion	Chr10	166206	166210	4
Deletion	Chr9	206099	206102	3
Deletion	Chr7	215989	215991	2
Deletion	Chr8	963282	963303	21
Deletion	Chr6	1575790	1575795	5
Deletion	Chr4	1954027	1954041	14
Deletion	Chr2	2664001	2709000	44999	8
Deletion	Chr2	2713001	2733000	19999	2
Deletion	Chr3	3277732	3277735	3
Deletion	Chr4	3522088	3522158	70
Deletion	Chr7	4565010	4565013	3
Deletion	Chr7	4622879	4622880	1
Deletion	Chr6	5162589	5162591	2
Deletion	Chr10	8477114	8477127	13
Deletion	Chr9	8548251	8548258	7
Deletion	Chr6	12216078	12216121	43
Deletion	Chr9	15181387	15181389	2
Deletion	Chr5	15968074	15968076	2
Deletion	Chr12	16018037	16018042	5
Deletion	Chr10	16172641	16172651	10
Deletion	Chr9	16214876	16214878	2
Deletion	Chr9	17357202	17357212	10	LOC_Os09g28540
Deletion	Chr10	17505608	17505622	14
Deletion	Chr3	18026433	18026434	1
Deletion	Chr1	18283076	18283077	1
Deletion	Chr4	18370353	18370357	4
Deletion	Chr9	22881845	22881848	3
Deletion	Chr5	23464767	23464773	6	LOC_Os05g39930
Deletion	Chr12	27493068	27493073	5	LOC_Os12g44350
Deletion	Chr1	33990857	33990858	1
Deletion	Chr1	34058206	34058216	10
Deletion	Chr4	34108120	34108123	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	22397593	22397595	3
Insertion	Chr11	3979219	3979221	3
Insertion	Chr3	19453451	19453458	8
Insertion	Chr9	7596473	7596473	1
Insertion	Chr11	28746600	28746600	1

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3091495	Chr1	41813589
Translocation	Chr7	11086758	Chr4	32086848
Translocation	Chr11	17795284	Chr7	29118626	LOC_Os07g48630
Translocation	Chr11	19757340	Chr1	33088407

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