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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23058	T-A	HET	UTR_5_PRIME
SBS	Chr1	9643079	A-G	HET	INTERGENIC
SBS	Chr1	22134014	G-A	HOMO	INTERGENIC
SBS	Chr1	27961262	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g48750
SBS	Chr1	27961263	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g48750
SBS	Chr1	28699659	G-T	HOMO	INTERGENIC
SBS	Chr2	8559711	A-T	HET	INTERGENIC
SBS	Chr2	10785715	G-T	HET	INTERGENIC
SBS	Chr2	19912155	T-G	HET	INTERGENIC
SBS	Chr2	23796244	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	35438851	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g57880
SBS	Chr3	17620805	T-A	HET	INTRON
SBS	Chr4	12783205	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	13563235	C-G	HOMO	INTERGENIC
SBS	Chr4	13888214	G-A	HOMO	INTERGENIC
SBS	Chr4	28615888	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	8540888	G-T	HET	INTERGENIC
SBS	Chr5	20860796	C-T	HET	INTERGENIC
SBS	Chr6	145595	C-T	HOMO	INTRON
SBS	Chr7	14053252	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24700
SBS	Chr7	26941597	A-T	HET	INTERGENIC
SBS	Chr8	9551610	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g15750
SBS	Chr8	13295803	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	13520624	C-T	HOMO	INTRON
SBS	Chr8	13520635	T-G	HOMO	INTRON
SBS	Chr8	26793736	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g42440
SBS	Chr9	9717176	C-T	HET	INTERGENIC
SBS	Chr9	10254514	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g16760
SBS	Chr10	7510941	A-C	HET	INTERGENIC
SBS	Chr11	2523890	G-A	HET	INTRON
SBS	Chr11	16633409	C-A	HOMO	INTERGENIC
SBS	Chr12	3043965	G-A	HET	INTERGENIC
SBS	Chr12	9716780	C-G	HET	INTERGENIC
SBS	Chr12	20359181	A-T	HET	INTERGENIC
SBS	Chr12	24620405	G-A	HET	SYNONYMOUS_CODING

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	265001	281000	15999	2
Deletion	Chr10	1802770	1802771	1
Deletion	Chr3	2278858	2278859	1	LOC_Os03g04790
Deletion	Chr2	2350987	2350994	7
Deletion	Chr12	2422567	2422571	4
Deletion	Chr12	4137070	4137154	84
Deletion	Chr1	5746642	5746643	1
Deletion	Chr6	6897100	6897111	11
Deletion	Chr7	7378001	7458000	79999	10
Deletion	Chr3	7382757	7382758	1
Deletion	Chr7	7462001	7740000	277999	46
Deletion	Chr12	9181418	9181434	16
Deletion	Chr2	10132676	10132688	12
Deletion	Chr2	17930001	17982000	51999	7
Deletion	Chr10	20702691	20702715	24	LOC_Os10g38870
Deletion	Chr6	21518860	21518861	1
Deletion	Chr12	26772071	26772078	7
Deletion	Chr7	27720139	27720140	1
Deletion	Chr3	32553474	32553479	5	LOC_Os03g57090

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	6457050	6457050	1
Insertion	Chr3	2973611	2973612	2
Insertion	Chr4	34504049	34504052	4
Insertion	Chr5	24996525	24996526	2
Insertion	Chr10	348650	348653	4
Insertion	Chr10	1348993	1348994	2	LOC_Os10g03190
Insertion	Chr1	14454752	14454752	1
Insertion	Chr2	33057036	33057038	3
Insertion	Chr6	8656151	8656156	6
Insertion	Chr7	26781253	26781253	1
Insertion	Chr8	18912894	18912919	26
Insertion	Chr11	22782088	22782119	32
Insertion	Chr12	13553852	13553895	44

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	11756334	12466511	LOC_Os12g20169
Inversion	Chr12	11756347	12466520	LOC_Os12g20169
Inversion	Chr8	13283278	13544382
Inversion	Chr8	13290077	13523924
Inversion	Chr8	13523915	13666611
Inversion	Chr8	13544391	13666680

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	7742322	Chr1	22939869
Translocation	Chr11	18508356	Chr1	40950870
Translocation	Chr4	27176931	Chr3	4142104	LOC_Os03g08110

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