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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17894348	T-C	HOMO	INTERGENIC
SBS	Chr1	34059791	G-T	HET	INTRON
SBS	Chr1	6997824	C-T	HOMO	INTERGENIC
SBS	Chr10	12394707	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	13190333	G-A	HOMO	INTERGENIC
SBS	Chr10	15348121	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g29540
SBS	Chr11	11500174	C-T	HET	INTERGENIC
SBS	Chr12	1023176	C-T	HET	INTERGENIC
SBS	Chr12	22476872	G-A	HET	INTERGENIC
SBS	Chr2	10764178	C-T	HOMO	INTERGENIC
SBS	Chr2	10764179	C-T	HOMO	INTERGENIC
SBS	Chr2	25176555	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g41890
SBS	Chr2	26024606	T-A	HOMO	INTERGENIC
SBS	Chr3	24981623	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g44400
SBS	Chr4	13761306	G-A	HET	INTERGENIC
SBS	Chr4	149304	G-A	HOMO	INTRON
SBS	Chr4	33358834	G-A	HET	INTERGENIC
SBS	Chr5	15547316	G-A	HET	INTERGENIC
SBS	Chr5	6684122	G-A	HOMO	INTRON
SBS	Chr6	16716694	G-A	HET	STOP_GAINED	LOC_Os06g29280
SBS	Chr6	5257785	A-G	HET	INTERGENIC
SBS	Chr6	5501385	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g10600
SBS	Chr7	14348653	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g25120
SBS	Chr7	28751629	A-C	HOMO	INTERGENIC
SBS	Chr7	7909280	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13800
SBS	Chr7	8716231	A-G	HET	INTERGENIC
SBS	Chr7	9325050	C-T	HET	SPLICE_SITE_REGION
SBS	Chr8	19209840	A-T	HET	INTERGENIC
SBS	Chr8	21310522	G-T	HOMO	INTERGENIC
SBS	Chr9	21717319	C-T	HOMO	INTERGENIC
SBS	Chr9	8330241	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g14070

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	674101	674103	2
Deletion	Chr5	1374001	1392000	18000	3
Deletion	Chr8	1876001	1914000	38000	5
Deletion	Chr12	2190933	2190946	13
Deletion	Chr9	2546177	2546178	1
Deletion	Chr1	3571431	3571436	5
Deletion	Chr11	6543412	6543440	28	LOC_Os11g11790
Deletion	Chr4	6667085	6667086	1
Deletion	Chr5	6792262	6792279	17
Deletion	Chr11	9116818	9116820	2	LOC_Os11g16480
Deletion	Chr1	9531001	9544000	13000	2
Deletion	Chr7	9771908	9771916	8
Deletion	Chr12	11128174	11128205	31
Deletion	Chr2	13605031	13605037	6
Deletion	Chr7	18474153	18474161	8
Deletion	Chr8	18733503	18733504	1
Deletion	Chr7	20202278	20202295	17
Deletion	Chr11	20242001	20255000	13000	2
Deletion	Chr4	20679554	20679560	6
Deletion	Chr6	20933151	20933174	23
Deletion	Chr8	21109672	21109685	13
Deletion	Chr7	21538389	21538390	1
Deletion	Chr2	23062974	23062989	15	LOC_Os02g38130
Deletion	Chr1	26588646	26588647	1
Deletion	Chr4	30523001	30538000	15000	4
Deletion	Chr2	30568205	30568206	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	38875578	38875579	2
Insertion	Chr2	35526121	35526122	2
Insertion	Chr3	6967772	6967772	1
Insertion	Chr5	7518315	7518315	1
Insertion	Chr9	463564	463566	3

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	8428042	Chr1	23528673	LOC_Os05g14820
Translocation	Chr7	15550475	Chr5	5643362

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