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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4160156	A-T	HET	INTERGENIC
SBS	Chr1	4276503	G-T	HET	INTERGENIC
SBS	Chr1	4276504	C-T	HET	INTERGENIC
SBS	Chr1	41867951	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g72205
SBS	Chr1	42721542	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g73750
SBS	Chr2	24881914	G-A	HET	INTERGENIC
SBS	Chr3	1305381	G-T	HET	INTERGENIC
SBS	Chr3	12791573	T-C	HET	INTRON
SBS	Chr3	20579396	A-G	HET	INTERGENIC
SBS	Chr3	35737691	G-T	HET	SPLICE_SITE_REGION
SBS	Chr4	10648883	C-A	HOMO	INTERGENIC
SBS	Chr4	19709860	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g32690
SBS	Chr4	19709861	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g32690
SBS	Chr5	8635485	A-G	HET	SYNONYMOUS_CODING
SBS	Chr5	18622169	T-C	HOMO	INTERGENIC
SBS	Chr5	20959559	C-T	HET	INTERGENIC
SBS	Chr5	22104976	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g37760
SBS	Chr6	1879603	T-C	HET	INTRON
SBS	Chr6	6022986	G-C	HET	INTERGENIC
SBS	Chr6	20250274	C-T	HOMO	INTERGENIC
SBS	Chr7	21303461	C-T	HET	INTRON
SBS	Chr7	25401629	A-T	HET	INTERGENIC
SBS	Chr7	25524878	G-T	HET	START_GAINED
SBS	Chr8	3926933	C-T	HET	INTERGENIC
SBS	Chr8	12112316	C-T	HET	INTERGENIC
SBS	Chr8	22344046	A-T	HET	INTERGENIC
SBS	Chr9	19797669	C-T	HET	INTRON
SBS	Chr10	19721820	C-T	HET	INTERGENIC
SBS	Chr10	20167057	G-T	HET	INTRON
SBS	Chr11	3289392	A-T	HET	INTERGENIC
SBS	Chr11	4739444	G-C	HOMO	INTERGENIC
SBS	Chr11	16471874	C-T	HET	INTERGENIC
SBS	Chr11	21987460	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g37210
SBS	Chr12	2157812	G-A	HET	INTRON
SBS	Chr12	6952552	A-T	HET	INTERGENIC
SBS	Chr12	13318326	C-T	HET	INTRON
SBS	Chr12	16938955	T-C	HOMO	INTERGENIC
SBS	Chr12	19117635	G-A	HOMO	INTERGENIC
SBS	Chr12	19117638	T-A	HOMO	INTERGENIC
SBS	Chr12	19117642	T-A	HOMO	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	716390	716398	8
Deletion	Chr11	1575536	1575537	1
Deletion	Chr8	1594378	1594379	1
Deletion	Chr7	3411011	3411016	5
Deletion	Chr5	5504336	5504339	3
Deletion	Chr4	9420650	9420662	12
Deletion	Chr12	11917764	11917782	18
Deletion	Chr2	12404894	12404895	1	LOC_Os02g20970
Deletion	Chr9	13105235	13105236	1	LOC_Os09g21640
Deletion	Chr1	14028969	14028970	1
Deletion	Chr10	15037001	15313000	275999	57
Deletion	Chr10	15179717	15179743	26
Deletion	Chr1	16093001	16157000	63999	13
Deletion	Chr1	16244001	16253000	8999	LOC_Os01g29050
Deletion	Chr1	16261001	16269000	7999	2
Deletion	Chr1	16279001	16293000	13999	3
Deletion	Chr5	16343721	16343747	26
Deletion	Chr8	16384425	16384481	56
Deletion	Chr4	16408632	16408693	61
Deletion	Chr11	17306095	17306097	2
Deletion	Chr3	17851451	17851452	1	LOC_Os03g31320
Deletion	Chr5	18284474	18284479	5	LOC_Os05g31440
Deletion	Chr8	18469492	18469505	13
Deletion	Chr8	21109551	21109553	2
Deletion	Chr9	21123410	21123460	50
Deletion	Chr2	21459149	21459150	1
Deletion	Chr12	22226752	22226753	1
Deletion	Chr11	27312050	27312053	3
Deletion	Chr11	27676960	27676986	26
Deletion	Chr6	28193488	28193489	1
Deletion	Chr4	31708736	31708737	1
Deletion	Chr4	33408029	33408046	17	LOC_Os04g56090
Deletion	Chr2	34039814	34039816	2
Deletion	Chr1	36027282	36027292	10

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	14715479	14715480	2
Insertion	Chr1	5943191	5943202	12
Insertion	Chr1	10106552	10106563	12
Insertion	Chr5	5186583	5186603	21
Insertion	Chr5	17220259	17220313	55
Insertion	Chr5	28410554	28410559	6
Insertion	Chr6	10456360	10456402	43
Insertion	Chr7	1308320	1308325	6
Insertion	Chr7	24240077	24240107	31
Insertion	Chr11	26391390	26391478	89
Insertion	Chr11	28746600	28746600	1
Insertion	Chr12	21737606	21737657	52

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3079308	3174698
Inversion	Chr4	11474272	11474560
Inversion	Chr1	16062208	16156957	LOC_Os01g28690
Inversion	Chr1	16062209	16244372	LOC_Os01g28690
Inversion	Chr1	16156983	16292147	LOC_Os01g28850

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	8867765	Chr1	16062213	LOC_Os01g28690
Translocation	Chr10	15297278	Chr4	4108314
Translocation	Chr10	18634800	Chr8	27836248
Translocation	Chr11	27253533	Chr7	22208108

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