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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1926552	C-A	HET	INTERGENIC
SBS	Chr1	2355963	C-A	HET	INTERGENIC
SBS	Chr1	20893674	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g37420
SBS	Chr1	25388127	G-A	HET	INTERGENIC
SBS	Chr1	25936980	T-C	HET	INTERGENIC
SBS	Chr1	42136829	G-A	HET	INTERGENIC
SBS	Chr3	16240370	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g28230
SBS	Chr3	17101847	A-T	HET	INTERGENIC
SBS	Chr3	25306654	A-T	HET	INTERGENIC
SBS	Chr3	29387144	C-T	HOMO	INTRON
SBS	Chr3	33474595	A-G	HOMO	UTR_3_PRIME
SBS	Chr4	17318242	G-A	HOMO	INTERGENIC
SBS	Chr4	33005303	G-A	HOMO	INTERGENIC
SBS	Chr4	33005304	G-A	HOMO	INTERGENIC
SBS	Chr5	8052482	C-T	HET	INTERGENIC
SBS	Chr5	12393175	C-T	HET	INTERGENIC
SBS	Chr5	29691267	G-T	HOMO	INTERGENIC
SBS	Chr6	1577597	G-T	HOMO	INTERGENIC
SBS	Chr6	1697228	G-T	HOMO	INTERGENIC
SBS	Chr6	1917947	G-A	HET	START_GAINED
SBS	Chr6	13125499	T-A	HOMO	INTERGENIC
SBS	Chr6	13125500	C-A	HOMO	INTERGENIC
SBS	Chr6	24918983	G-C	HET	INTRON
SBS	Chr6	30792336	C-G	HET	INTERGENIC
SBS	Chr7	5549908	T-A	HOMO	INTERGENIC
SBS	Chr7	22073032	G-T	HET	INTERGENIC
SBS	Chr8	19084533	C-A	HET	INTERGENIC
SBS	Chr8	21082870	A-T	HOMO	INTRON
SBS	Chr9	2528228	C-T	HOMO	INTERGENIC
SBS	Chr9	6661977	C-T	HOMO	INTERGENIC
SBS	Chr9	10819039	T-A	HOMO	INTERGENIC
SBS	Chr9	15947111	T-A	HET	INTRON
SBS	Chr9	18254065	C-T	HET	INTERGENIC
SBS	Chr11	709932	C-G	HET	INTERGENIC
SBS	Chr11	8464251	C-T	HET	INTERGENIC
SBS	Chr12	9768808	G-A	HET	UTR_3_PRIME
SBS	Chr12	15635184	T-G	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	5252639	5252641	2	LOC_Os07g09880
Deletion	Chr12	5348250	5348260	10	LOC_Os12g10100
Deletion	Chr10	5746023	5746024	1
Deletion	Chr3	6750844	6750845	1
Deletion	Chr3	8093476	8093483	7
Deletion	Chr7	8441495	8441496	1
Deletion	Chr4	10720330	10720331	1	LOC_Os04g19270
Deletion	Chr7	12921864	12921865	1
Deletion	Chr1	13204964	13204966	2
Deletion	Chr12	16307086	16307087	1
Deletion	Chr8	16900001	17045000	144999	21
Deletion	Chr8	17066001	17273000	206999	28
Deletion	Chr8	17141485	17141487	2
Deletion	Chr8	17290001	17475000	184999	26
Deletion	Chr4	17301319	17301321	2
Deletion	Chr8	17424620	17424621	1	LOC_Os08g28530
Deletion	Chr8	17485001	17905000	419999	56
Deletion	Chr1	18756825	18756827	2
Deletion	Chr11	27607755	27607779	24
Deletion	Chr2	28384425	28384446	21
Deletion	Chr4	29402058	29402059	1
Deletion	Chr6	30093432	30093439	7	LOC_Os06g49750

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1824818	1824820	3
Insertion	Chr1	25734934	25734934	1
Insertion	Chr2	13783039	13783040	2
Insertion	Chr2	16603861	16603890	30
Insertion	Chr3	21822934	21822934	1
Insertion	Chr4	4431807	4431807	1
Insertion	Chr4	15266164	15266164	1
Insertion	Chr5	9484942	9484944	3
Insertion	Chr6	8170442	8170456	15
Insertion	Chr6	19659864	19659864	1
Insertion	Chr7	18965826	18965827	2
Insertion	Chr8	17291236	17291236	1
Insertion	Chr8	25999155	25999157	3	LOC_Os08g41160
Insertion	Chr9	5571165	5571165	1
Insertion	Chr11	14722168	14722168	1
Insertion	Chr11	26147100	26147101	2
Insertion	Chr12	17433689	17433689	1

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	4256332	Chr2	18648256
Translocation	Chr8	12109439	Chr2	9635747	LOC_Os08g20180
Translocation	Chr9	13194183	Chr2	30102409
Translocation	Chr6	22659473	Chr3	9388540
Translocation	Chr11	28648037	Chr8	1849199	LOC_Os08g03880

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