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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36767055	T-G	HET	INTERGENIC
SBS	Chr10	10478552	T-C	HOMO	INTERGENIC
SBS	Chr10	12206886	T-C	HOMO	INTERGENIC
SBS	Chr10	17303355	T-A	HET	INTERGENIC
SBS	Chr11	21160498	T-C	HET	INTERGENIC
SBS	Chr11	9321461	T-A	HET	INTERGENIC
SBS	Chr2	21091410	T-C	HET	INTERGENIC
SBS	Chr3	19287788	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33740
SBS	Chr3	28867519	G-A	HET	INTERGENIC
SBS	Chr4	21626749	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g35520
SBS	Chr4	7477608	A-C	HET	INTERGENIC
SBS	Chr4	9920811	C-T	HET	INTERGENIC
SBS	Chr6	1582044	A-T	HET	UTR_3_PRIME
SBS	Chr6	5611611	A-T	HET	INTERGENIC
SBS	Chr6	9691822	G-T	HET	INTERGENIC
SBS	Chr7	2587590	G-A	HET	INTRON
SBS	Chr7	6894587	C-T	HET	INTERGENIC
SBS	Chr8	10386668	A-G	HET	INTERGENIC
SBS	Chr8	17576287	G-A	HET	UTR_5_PRIME
SBS	Chr9	13676107	T-C	HET	SYNONYMOUS_CODING
SBS	Chr9	5161096	A-C	HET	INTRON

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	234608	234622	14	LOC_Os11g01380
Deletion	Chr8	1060483	1060484	1
Deletion	Chr2	1530001	1573000	42999	9
Deletion	Chr4	3191147	3191149	2	LOC_Os04g06130
Deletion	Chr11	5054798	5054802	4
Deletion	Chr9	5429001	5465000	35999	6
Deletion	Chr8	5533115	5533116	1
Deletion	Chr7	5732788	5732789	1
Deletion	Chr1	7507072	7507087	15	LOC_Os01g13470
Deletion	Chr2	8779001	8835000	55999	7
Deletion	Chr11	14649538	14649541	3
Deletion	Chr6	18327568	18327569	1
Deletion	Chr7	20672987	20672999	12	LOC_Os07g34490
Deletion	Chr6	22125896	22125919	23
Deletion	Chr2	22191428	22191432	4
Deletion	Chr3	25435031	25435035	4
Deletion	Chr6	26221638	26221639	1
Deletion	Chr8	26941787	26941807	20
Deletion	Chr3	33737261	33737269	8
Deletion	Chr3	34226197	34226213	16

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	35770112	35770113	2
Insertion	Chr2	16618816	16618819	4
Insertion	Chr2	8186015	8186020	6
Insertion	Chr3	22475639	22475639	1
Insertion	Chr6	18347855	18347855	1
Insertion	Chr9	1440252	1440253	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5819766	5819929

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	22791714	Chr3	15008633
Translocation	Chr7	26405252	Chr3	28784259
Translocation	Chr7	26405257	Chr3	28745828	LOC_Os03g50364
Translocation	Chr12	27047830	Chr4	1112667	LOC_Os04g02850
Translocation	Chr12	27047970	Chr3	11598832	LOC_Os03g20460
Translocation	Chr12	27114842	Chr2	8780275
Translocation	Chr12	27116284	Chr1	42883603
Translocation	Chr12	27337443	Chr1	42903828

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