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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19636654	C-T	HOMO	INTERGENIC
SBS	Chr1	39221861	T-C	HET	INTERGENIC
SBS	Chr2	33752586	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g55110
SBS	Chr3	24211145	T-C	HET	INTERGENIC
SBS	Chr4	1663557	G-A	HET	INTERGENIC
SBS	Chr4	2623977	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	5500839	G-C	HET	INTERGENIC
SBS	Chr4	8131993	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14520
SBS	Chr4	17597352	G-A	HET	INTERGENIC
SBS	Chr4	29884868	A-G	HOMO	START_GAINED
SBS	Chr5	1605154	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	1605156	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g03690
SBS	Chr5	8152718	C-A	HET	INTERGENIC
SBS	Chr5	8799450	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15550
SBS	Chr6	6969837	G-A	HET	INTERGENIC
SBS	Chr6	26068223	A-G	HOMO	INTERGENIC
SBS	Chr7	6801187	A-G	HOMO	INTERGENIC
SBS	Chr8	478398	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g01794
SBS	Chr8	1581310	G-T	HET	UTR_3_PRIME
SBS	Chr8	1581312	T-C	HET	UTR_3_PRIME
SBS	Chr8	10878261	T-C	HET	INTRON
SBS	Chr8	12822436	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g21520
SBS	Chr8	15479022	A-T	HET	SPLICE_SITE_ACCEPTOR	LOC_Os08g25430
SBS	Chr9	13660829	C-T	HET	INTERGENIC
SBS	Chr9	17959141	C-T	HET	INTERGENIC
SBS	Chr10	3170971	C-A	HOMO	INTRON
SBS	Chr10	20701862	C-A	HET	INTERGENIC
SBS	Chr11	9620207	C-T	HET	INTERGENIC
SBS	Chr11	10201811	C-T	HET	INTRON
SBS	Chr11	10201812	A-T	HET	INTRON
SBS	Chr11	14900939	C-T	HET	INTERGENIC
SBS	Chr11	16467653	C-T	HET	INTERGENIC
SBS	Chr11	25157396	T-G	HET	INTERGENIC
SBS	Chr11	26386269	A-T	HET	INTERGENIC
SBS	Chr12	5524829	T-C	HET	INTERGENIC
SBS	Chr12	21507933	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g35370

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	828940	828944	4
Deletion	Chr8	1777864	1777865	1
Deletion	Chr9	2687807	2687809	2	LOC_Os09g04990
Deletion	Chr8	3911768	3911773	5
Deletion	Chr4	5039234	5039236	2
Deletion	Chr11	5969001	5980000	10999	4
Deletion	Chr9	6891538	6891547	9
Deletion	Chr1	7093071	7093076	5	LOC_Os01g12810
Deletion	Chr7	9766977	9766982	5
Deletion	Chr7	10446430	10446431	1
Deletion	Chr6	11800947	11800952	5
Deletion	Chr3	13047180	13047185	5
Deletion	Chr3	13064040	13064044	4	LOC_Os03g22634
Deletion	Chr7	13523651	13523653	2
Deletion	Chr3	13655699	13655700	1
Deletion	Chr12	14018603	14018614	11	LOC_Os12g24540
Deletion	Chr4	19544456	19544464	8
Deletion	Chr4	21734441	21734446	5	LOC_Os04g35660
Deletion	Chr10	22025980	22025989	9
Deletion	Chr8	22593874	22593907	33
Deletion	Chr6	24242466	24242472	6	LOC_Os06g40660
Deletion	Chr3	24765332	24765334	2
Deletion	Chr6	25231425	25231426	1	LOC_Os06g42020
Deletion	Chr2	25334190	25334202	12
Deletion	Chr8	25691846	25691855	9
Deletion	Chr7	25780636	25780644	8
Deletion	Chr3	31579868	31579870	2
Deletion	Chr1	31639651	31639677	26
Deletion	Chr1	43187790	43187800	10

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	25089464	25089473	10
Insertion	Chr7	24240105	24240183	79

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5966126	5969437	LOC_Os11g10820
Inversion	Chr11	9840757	9912542
Inversion	Chr11	9912528	10442374
Inversion	Chr11	10201001	10219655
Inversion	Chr11	10219662	10442830

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	1302556	Chr2	15512942
Translocation	Chr11	6602817	Chr2	4170016
Translocation	Chr10	6817373	Chr6	18374054	2
Translocation	Chr12	9418700	Chr1	818514
Translocation	Chr11	10201011	Chr5	22349550
Translocation	Chr11	10201166	Chr5	22349551
Translocation	Chr11	10874570	Chr2	5944591	LOC_Os02g11090
Translocation	Chr11	11900466	Chr9	13703331
Translocation	Chr9	15256577	Chr8	12780720
Translocation	Chr6	24570067	Chr2	18235196

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