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| Mutant Information |
|---|
| Mutant Name | FN3283-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3283-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 15559160 | A-C | HET | ||
| SBS | Chr11 | 11434343 | G-A | HET | ||
| SBS | Chr11 | 12010790 | C-A | Homo | STOP_GAINED | LOC_Os11g20750 |
| SBS | Chr11 | 15422684 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g26850 |
| SBS | Chr11 | 15567450 | G-T | HET | ||
| SBS | Chr11 | 18604245 | G-A | HET | ||
| SBS | Chr11 | 26900747 | A-C | HET | ||
| SBS | Chr11 | 3924410 | T-A | HET | ||
| SBS | Chr12 | 19590916 | C-T | Homo | ||
| SBS | Chr12 | 20410351 | C-T | Homo | ||
| SBS | Chr12 | 2777324 | G-A | HET | ||
| SBS | Chr3 | 2087593 | T-A | HET | ||
| SBS | Chr3 | 28635740 | A-C | HET | ||
| SBS | Chr4 | 15527388 | G-T | Homo | ||
| SBS | Chr4 | 27693360 | T-A | Homo | ||
| SBS | Chr5 | 20778526 | T-G | HET | ||
| SBS | Chr5 | 20778527 | G-T | HET | ||
| SBS | Chr5 | 20778528 | A-T | HET | ||
| SBS | Chr5 | 25207288 | C-T | Homo | STOP_GAINED | LOC_Os05g43340 |
| SBS | Chr6 | 25579581 | A-T | HET | ||
| SBS | Chr6 | 25579582 | A-T | HET | ||
| SBS | Chr7 | 26809224 | C-T | Homo | ||
| SBS | Chr7 | 26809227 | C-G | Homo | ||
| SBS | Chr8 | 17598255 | G-A | Homo | ||
| SBS | Chr8 | 7170581 | C-T | Homo | ||
| SBS | Chr9 | 20592152 | A-G | HET | ||
| SBS | Chr9 | 20716314 | T-C | HET | ||
| SBS | Chr9 | 5430725 | G-C | HET | ||
| SBS | Chr9 | 7147238 | G-A | HET | ||
| SBS | Chr9 | 9733096 | G-A | Homo |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 6444119 | 6444120 | 1 | LOC_Os04g11770 |
| Deletion | Chr1 | 6476974 | 6476976 | 2 | |
| Deletion | Chr8 | 7860970 | 7860971 | 1 | |
| Deletion | Chr8 | 11166774 | 11166775 | 1 | LOC_Os08g18220 |
| Deletion | Chr3 | 18879095 | 18879110 | 15 | |
| Deletion | Chr8 | 22345607 | 22345608 | 1 | |
| Deletion | Chr5 | 22484990 | 22485000 | 10 | |
| Deletion | Chr6 | 25769796 | 25769800 | 4 | |
| Deletion | Chr7 | 26724745 | 26724750 | 5 | |
| Deletion | Chr5 | 26874490 | 26874499 | 9 | |
| Deletion | Chr2 | 31941566 | 31941567 | 1 | |
| Deletion | Chr1 | 33595001 | 33817000 | 221999 | 39 |
| Deletion | Chr4 | 33823605 | 33823622 | 17 | LOC_Os04g56720 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 5025523 | 5025523 | 1 | |
| Insertion | Chr12 | 13921592 | 13921594 | 3 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 37568791 | 37775650 | 2 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 3127266 | Chr1 | 37661625 | LOC_Os05g06210 |
| Translocation | Chr12 | 14276565 | Chr3 | 6548021 | |
| Translocation | Chr2 | 16073113 | Chr1 | 22308703 | |
| Translocation | Chr9 | 18188821 | Chr7 | 19496897 | 2 |
| Translocation | Chr9 | 18195003 | Chr7 | 19496913 | 2 |
| Translocation | Chr4 | 20729204 | Chr1 | 1970263 | 2 |
| Translocation | Chr2 | 21647280 | Chr1 | 38171257 | 2 |
| Translocation | Chr11 | 25332561 | Chr7 | 5263170 | |
| Translocation | Chr3 | 26496232 | Chr2 | 5969105 |