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| Mutant Information |
|---|
| Mutant Name | FN3288-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3288-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21539225 | T-C | HET | ||
| SBS | Chr1 | 26418162 | G-T | Homo | ||
| SBS | Chr10 | 159666 | C-T | Homo | ||
| SBS | Chr10 | 3700936 | G-T | Homo | ||
| SBS | Chr10 | 9636249 | C-G | HET | ||
| SBS | Chr11 | 1455831 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g03730 |
| SBS | Chr11 | 9670664 | G-A | HET | ||
| SBS | Chr12 | 7266928 | C-T | HET | ||
| SBS | Chr2 | 25632316 | C-T | HET | ||
| SBS | Chr2 | 25632319 | A-T | HET | ||
| SBS | Chr2 | 25632322 | T-C | HET | ||
| SBS | Chr3 | 17954274 | G-T | HET | ||
| SBS | Chr3 | 18633355 | A-G | HET | ||
| SBS | Chr4 | 14673922 | C-T | Homo | ||
| SBS | Chr4 | 8416963 | C-T | Homo | ||
| SBS | Chr5 | 12781411 | A-G | HET | ||
| SBS | Chr5 | 410159 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g01680 |
| SBS | Chr5 | 4619562 | A-T | Homo | ||
| SBS | Chr6 | 14263034 | G-C | Homo | ||
| SBS | Chr6 | 24377401 | G-A | HET | ||
| SBS | Chr6 | 26439283 | C-T | HET | ||
| SBS | Chr7 | 26212916 | A-G | HET | ||
| SBS | Chr7 | 29272652 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g48920 |
| SBS | Chr8 | 158611 | T-A | HET | ||
| SBS | Chr8 | 25195161 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g39810 |
| SBS | Chr8 | 27746761 | C-T | Homo | ||
| SBS | Chr9 | 14650514 | T-A | Homo | ||
| SBS | Chr9 | 203376 | C-A | HET | ||
| SBS | Chr9 | 2208603 | T-C | HET | ||
| SBS | Chr9 | 5708908 | C-T | HET | ||
| SBS | Chr9 | 9765832 | G-A | HET | ||
| SBS | Chr9 | 9765833 | G-A | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 77001 | 81000 | 3999 | 2 |
| Deletion | Chr8 | 2866003 | 2866004 | 1 | |
| Deletion | Chr1 | 4183496 | 4183501 | 5 | |
| Deletion | Chr12 | 5214151 | 5214152 | 1 | |
| Deletion | Chr4 | 7371346 | 7371352 | 6 | LOC_Os04g13290 |
| Deletion | Chr6 | 12097120 | 12097124 | 4 | |
| Deletion | Chr9 | 12691180 | 12691184 | 4 | |
| Deletion | Chr2 | 12855292 | 12855315 | 23 | |
| Deletion | Chr4 | 13834752 | 13834767 | 15 | |
| Deletion | Chr2 | 15430215 | 15430216 | 1 | LOC_Os02g26280 |
| Deletion | Chr11 | 25740024 | 25740027 | 3 | |
| Deletion | Chr1 | 41249001 | 41266000 | 16999 | 2 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 14163709 | 14163709 | 1 | LOC_Os10g26920 |
| Insertion | Chr11 | 20550557 | 20550560 | 4 | |
| Insertion | Chr12 | 7340110 | 7340110 | 1 | |
| Insertion | Chr2 | 8352718 | 8352720 | 3 | |
| Insertion | Chr4 | 10884121 | 10884122 | 2 | |
| Insertion | Chr8 | 144604 | 144604 | 1 |
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 5257514 | 5409664 | 2 |
| Inversion | Chr1 | 5257525 | 5410033 | 2 |
| Inversion | Chr11 | 5592886 | 6043514 | LOC_Os11g10310 |
| Inversion | Chr11 | 6021301 | 6043501 | LOC_Os11g10910 |
| Inversion | Chr2 | 14168366 | 14370657 | 2 |
| Inversion | Chr2 | 29804658 | 29805696 | 2 |
| Inversion | Chr3 | 35056027 | 35366024 | 2 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 7210005 | Chr4 | 6467110 | |
| Translocation | Chr11 | 9639721 | Chr6 | 1887420 | 2 |
| Translocation | Chr11 | 13171280 | Chr4 | 936837 | LOC_Os11g22910 |