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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15556535	A-G	Homo
SBS	Chr1	18234376	A-G	Homo
SBS	Chr1	25654584	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g45210
SBS	Chr1	29352750	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g51100
SBS	Chr2	22101967	A-T	HET
SBS	Chr3	1045883	C-A	HET
SBS	Chr3	7981292	T-A	HET
SBS	Chr3	18111105	G-A	Homo
SBS	Chr3	29233812	A-G	HET
SBS	Chr4	4740057	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g08740
SBS	Chr5	8665637	G-A	HET	STOP_GAINED	LOC_Os05g15280
SBS	Chr6	17323276	G-A	HET
SBS	Chr6	19996769	G-T	HET
SBS	Chr6	24473705	T-C	Homo
SBS	Chr7	4064086	A-C	HET
SBS	Chr7	10936025	A-T	HET
SBS	Chr8	9960274	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g16320
SBS	Chr8	14028457	G-A	HET
SBS	Chr8	16115546	C-T	HET
SBS	Chr9	13402438	T-A	Homo
SBS	Chr9	13402440	C-A	Homo
SBS	Chr9	22717510	C-A	HET
SBS	Chr9	22717512	G-A	HET
SBS	Chr11	3821939	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g07540
SBS	Chr11	10891332	T-A	Homo
SBS	Chr11	20966040	C-T	HET
SBS	Chr12	4711988	A-C	HET
SBS	Chr12	16558058	T-C	HET
SBS	Chr12	18182953	C-G	HET
SBS	Chr12	25597319	G-A	Homo

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3381610	3381616	6
Deletion	Chr11	6073121	6073124	3
Deletion	Chr5	10658557	10658560	3
Deletion	Chr6	13226577	13226594	17
Deletion	Chr4	13407575	13407578	3
Deletion	Chr4	18614001	18652000	37999	5
Deletion	Chr1	19991251	19991253	2
Deletion	Chr7	21715183	21715194	11
Deletion	Chr4	25505063	25505064	1
Deletion	Chr6	27281684	27281691	7

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	7638956	7639035	80
Insertion	Chr7	2973530	2973530	1
Insertion	Chr10	1596388	1596390	3
Insertion	Chr10	6412191	6412247	57
Insertion	Chr10	15399535	15399611	77

No Inversion

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	635888	Chr4	18762732
Translocation	Chr4	4806845	Chr3	18327007	2
Translocation	Chr12	7847476	Chr1	38255520	2
Translocation	Chr12	7848880	Chr1	38255539	2
Translocation	Chr4	7871788	Chr2	34492097
Translocation	Chr12	19451269	Chr5	22216362	2
Translocation	Chr12	19451289	Chr5	22215482	2
Translocation	Chr5	21190677	Chr4	18651863	LOC_Os05g35650
Translocation	Chr5	21199371	Chr4	18615288

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