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Mutant Information

Mutant Name	FN3295-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3295-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13752762	C-A	HET
SBS	Chr1	1565304	T-C	HET
SBS	Chr1	3488451	A-T	HET
SBS	Chr10	1360540	T-A	Homo
SBS	Chr10	22739894	A-C	Homo
SBS	Chr10	22739896	T-A	Homo
SBS	Chr11	14800675	G-A	HET
SBS	Chr11	16442791	C-T	HET
SBS	Chr12	1296676	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g03340
SBS	Chr12	19741952	G-A	HET
SBS	Chr4	3231270	C-G	HET
SBS	Chr4	8026535	T-C	HET
SBS	Chr4	8735573	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16100
SBS	Chr5	19474813	G-A	HET
SBS	Chr5	25804388	C-A	HET	STOP_GAINED	LOC_Os05g44340
SBS	Chr5	6372329	G-A	HET
SBS	Chr7	14838424	G-A	Homo
SBS	Chr8	3850760	G-T	HET
SBS	Chr9	2675160	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04970

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	480762	480763	1
Deletion	Chr2	1031628	1031635	7
Deletion	Chr11	3314663	3314666	3	LOC_Os11g06780
Deletion	Chr10	3855035	3855049	14
Deletion	Chr5	4976304	4976305	1
Deletion	Chr10	7616229	7616232	3	LOC_Os10g14011
Deletion	Chr6	9303263	9303264	1	LOC_Os06g16320
Deletion	Chr6	14509792	14509796	4
Deletion	Chr1	18915877	18915879	2
Deletion	Chr9	20499590	20499591	1
Deletion	Chr10	21941471	21941473	2
Deletion	Chr2	22651064	22651065	1	LOC_Os02g37540
Deletion	Chr11	24775816	24775822	6
Deletion	Chr12	25137898	25137899	1
Deletion	Chr8	25274049	25274051	2
Deletion	Chr12	26874439	26874452	13

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	5347438	5347439	2
Insertion	Chr5	10696518	10696518	1
Insertion	Chr7	21095996	21095997	2
Insertion	Chr8	17446884	17446884	1
Insertion	Chr9	5298719	5298719	1

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	888351	Chr7	21020820	LOC_Os12g02570
Translocation	Chr6	5537667	Chr4	8208140
Translocation	Chr8	7274779	Chr5	22892619	LOC_Os08g12350