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| Mutant Information |
|---|
| Mutant Name | FN3296-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3296-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21612467 | T-G | HET | ||
| SBS | Chr10 | 10753828 | G-T | HET | ||
| SBS | Chr10 | 11876774 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g22850 |
| SBS | Chr11 | 17281525 | G-A | Homo | ||
| SBS | Chr11 | 22501555 | A-T | Homo | ||
| SBS | Chr11 | 23516051 | C-G | HET | ||
| SBS | Chr11 | 25736151 | C-T | HET | ||
| SBS | Chr12 | 21002996 | C-T | Homo | ||
| SBS | Chr12 | 27446979 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g44280 |
| SBS | Chr12 | 3100781 | G-A | HET | ||
| SBS | Chr2 | 19517941 | C-T | HET | ||
| SBS | Chr2 | 2224972 | G-A | HET | ||
| SBS | Chr4 | 15947356 | T-G | HET | ||
| SBS | Chr4 | 18429307 | T-G | HET | ||
| SBS | Chr4 | 25418680 | T-C | HET | ||
| SBS | Chr4 | 32853348 | C-T | Homo | ||
| SBS | Chr4 | 3321127 | G-A | HET | ||
| SBS | Chr5 | 11982263 | A-G | HET | ||
| SBS | Chr5 | 13200654 | C-T | HET | ||
| SBS | Chr5 | 13382716 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g23420 |
| SBS | Chr5 | 27113797 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g46810 |
| SBS | Chr5 | 8432119 | G-A | HET | ||
| SBS | Chr5 | 8825879 | C-T | HET | ||
| SBS | Chr6 | 21230561 | G-A | Homo | ||
| SBS | Chr6 | 4124147 | A-G | HET | ||
| SBS | Chr6 | 6312486 | A-G | HET | ||
| SBS | Chr7 | 11810261 | C-A | HET | STOP_GAINED | LOC_Os07g20450 |
| SBS | Chr7 | 16720983 | T-A | HET | ||
| SBS | Chr7 | 26760017 | G-A | Homo | ||
| SBS | Chr8 | 25056048 | G-T | HET | ||
| SBS | Chr8 | 25056049 | G-T | HET | ||
| SBS | Chr8 | 7721663 | C-T | HET | ||
| SBS | Chr8 | 861279 | C-T | HET | ||
| SBS | Chr9 | 16724636 | T-A | Homo |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1705001 | 1725000 | 19999 | 3 |
| Deletion | Chr9 | 3199189 | 3199191 | 2 | |
| Deletion | Chr10 | 3478370 | 3478371 | 1 | |
| Deletion | Chr12 | 4906468 | 4906472 | 4 | |
| Deletion | Chr8 | 6525579 | 6525583 | 4 | |
| Deletion | Chr2 | 10879954 | 10879956 | 2 | |
| Deletion | Chr12 | 11911824 | 11911825 | 1 | |
| Deletion | Chr3 | 12291959 | 12291960 | 1 | |
| Deletion | Chr2 | 12396274 | 12396275 | 1 | LOC_Os02g20960 |
| Deletion | Chr7 | 16384095 | 16384099 | 4 | |
| Deletion | Chr12 | 17996187 | 17996188 | 1 | LOC_Os12g30050 |
| Deletion | Chr10 | 22011768 | 22011861 | 93 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 33083050 | 33083097 | 48 | LOC_Os01g57250 |
| Insertion | Chr10 | 5746056 | 5746056 | 1 | |
| Insertion | Chr11 | 22130893 | 22130922 | 30 | |
| Insertion | Chr11 | 25275166 | 25275185 | 20 | |
| Insertion | Chr5 | 21816867 | 21816867 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 34483476 | 34898296 | LOC_Os01g59620 |
| Inversion | Chr1 | 34483484 | 34898305 | LOC_Os01g59620 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 748151 | Chr11 | 718120 | |
| Translocation | Chr8 | 14737488 | Chr7 | 5214800 | |
| Translocation | Chr8 | 16049338 | Chr4 | 13175657 | LOC_Os08g26310 |
| Translocation | Chr11 | 21128573 | Chr1 | 19235232 | |
| Translocation | Chr3 | 31068314 | Chr1 | 16252162 | |
| Translocation | Chr4 | 32800003 | Chr3 | 5096190 |