Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3302-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3302-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10260836 | G-A | HET | ||
| SBS | Chr10 | 11685303 | G-A | HET | ||
| SBS | Chr10 | 19370831 | C-T | HET | ||
| SBS | Chr11 | 15450221 | G-A | HET | ||
| SBS | Chr11 | 15685346 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g27264 |
| SBS | Chr11 | 9200226 | C-T | HET | ||
| SBS | Chr12 | 13581409 | G-A | HET | ||
| SBS | Chr2 | 21653343 | C-T | HET | ||
| SBS | Chr2 | 30419317 | C-T | Homo | ||
| SBS | Chr2 | 3410787 | G-A | Homo | ||
| SBS | Chr3 | 20544935 | T-C | HET | ||
| SBS | Chr3 | 22079849 | G-A | HET | ||
| SBS | Chr4 | 1649848 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g03720 |
| SBS | Chr4 | 18795915 | A-G | HET | ||
| SBS | Chr4 | 26738557 | A-T | HET | ||
| SBS | Chr5 | 4966051 | G-T | HET | ||
| SBS | Chr6 | 14132222 | A-C | HET | ||
| SBS | Chr6 | 28933990 | G-A | Homo | ||
| SBS | Chr6 | 29084861 | T-A | HET | ||
| SBS | Chr6 | 4950008 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g09688 |
| SBS | Chr7 | 3814594 | G-A | HET | ||
| SBS | Chr9 | 3510438 | A-G | Homo | ||
| SBS | Chr9 | 4886335 | C-A | Homo | ||
| SBS | Chr9 | 7427327 | A-G | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2859960 | 2859961 | 1 | |
| Deletion | Chr9 | 3151501 | 3151504 | 3 | |
| Deletion | Chr11 | 3265558 | 3265559 | 1 | |
| Deletion | Chr3 | 5702614 | 5702618 | 4 | |
| Deletion | Chr9 | 10249900 | 10249901 | 1 | |
| Deletion | Chr1 | 21459598 | 21459601 | 3 | |
| Deletion | Chr10 | 22348504 | 22348512 | 8 | |
| Deletion | Chr4 | 32200098 | 32200106 | 8 | LOC_Os04g54020 |
| Deletion | Chr1 | 34049175 | 34049176 | 1 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 23067221 | 23067221 | 1 | |
| Insertion | Chr10 | 15983382 | 15983459 | 78 | |
| Insertion | Chr11 | 27829219 | 27829220 | 2 | |
| Insertion | Chr5 | 2235162 | 2235162 | 1 | LOC_Os05g04730 |
| Insertion | Chr8 | 17969694 | 17969742 | 49 |
Inversions: 5
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 1654911 | Chr4 | 5364223 | LOC_Os08g03560 |
| Translocation | Chr8 | 1841333 | Chr6 | 27286060 | |
| Translocation | Chr12 | 5473145 | Chr5 | 6201203 | |
| Translocation | Chr5 | 8428043 | Chr1 | 23528720 | LOC_Os05g14820 |
| Translocation | Chr9 | 14121345 | Chr8 | 9980649 | |
| Translocation | Chr4 | 17832090 | Chr2 | 12837075 | |
| Translocation | Chr3 | 19118835 | Chr1 | 17033328 | |
| Translocation | Chr10 | 22790219 | Chr9 | 1626374 | LOC_Os10g42340 |