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Mutant Information

Mutant NameFN3302-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3302-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 24
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr110260836G-AHET
SBSChr1011685303G-AHET
SBSChr1019370831C-THET
SBSChr1115450221G-AHET
SBSChr1115685346A-GHETNON_SYNONYMOUS_CODINGLOC_Os11g27264
SBSChr119200226C-THET
SBSChr1213581409G-AHET
SBSChr221653343C-THET
SBSChr230419317C-THomo
SBSChr23410787G-AHomo
SBSChr320544935T-CHET
SBSChr322079849G-AHET
SBSChr41649848G-AHETNON_SYNONYMOUS_CODINGLOC_Os04g03720
SBSChr418795915A-GHET
SBSChr426738557A-THET
SBSChr54966051G-THET
SBSChr614132222A-CHET
SBSChr628933990G-AHomo
SBSChr629084861T-AHET
SBSChr64950008G-THETNON_SYNONYMOUS_CODINGLOC_Os06g09688
SBSChr73814594G-AHET
SBSChr93510438A-GHomo
SBSChr94886335C-AHomo
SBSChr97427327A-GHET

Deletions: 9
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr9285996028599611
DeletionChr9315150131515043
DeletionChr11326555832655591
DeletionChr3570261457026184
DeletionChr910249900102499011
DeletionChr121459598214596013
DeletionChr1022348504223485128
DeletionChr432200098322001068LOC_Os04g54020
DeletionChr134049175340491761

Insertions: 5
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr123067221230672211
InsertionChr10159833821598345978
InsertionChr1127829219278292202
InsertionChr5223516222351621LOC_Os05g04730image
InsertionChr8179696941796974249

Inversions: 5
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr8165362918405722
InversionChr295839569584087
InversionChr51008881710224789
InversionChr42411084124110970
InversionChr42411090024111006

Translocations: 8
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr81654911Chr45364223LOC_Os08g03560
TranslocationChr81841333Chr627286060
TranslocationChr125473145Chr56201203
TranslocationChr58428043Chr123528720LOC_Os05g14820
TranslocationChr914121345Chr89980649
TranslocationChr417832090Chr212837075
TranslocationChr319118835Chr117033328
TranslocationChr1022790219Chr91626374LOC_Os10g42340