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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27808225	G-A	HET
SBS	Chr1	9376393	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g16520
SBS	Chr10	15803013	A-G	Homo
SBS	Chr10	15803015	G-T	Homo
SBS	Chr12	15808040	G-A	HET
SBS	Chr2	19274648	C-T	Homo
SBS	Chr2	20801963	T-A	HET
SBS	Chr2	30512726	C-T	HET
SBS	Chr2	32359777	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g52930
SBS	Chr2	6466046	A-T	HET
SBS	Chr2	9979822	T-C	HET
SBS	Chr3	10711559	G-A	Homo
SBS	Chr3	21550523	G-A	HET
SBS	Chr3	28100038	G-A	HET
SBS	Chr4	10632920	G-A	HET
SBS	Chr4	11118109	C-T	HET
SBS	Chr4	28363279	G-A	HET	STOP_GAINED	LOC_Os04g47800
SBS	Chr4	4486080	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g08390
SBS	Chr5	13438289	C-T	HET
SBS	Chr5	16890867	T-A	Homo
SBS	Chr5	27326139	A-G	HET
SBS	Chr6	7805119	G-T	Homo
SBS	Chr7	10391017	C-T	Homo
SBS	Chr8	10756161	T-C	HET
SBS	Chr8	11949294	C-T	HET
SBS	Chr8	16864676	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g27674
SBS	Chr8	26322774	C-T	HET

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1139005	1139035	30
Deletion	Chr10	9832335	9832336	1
Deletion	Chr3	10745301	10745304	3
Deletion	Chr3	24738194	24738195	1
Deletion	Chr12	27414990	27415311	321
Deletion	Chr1	32039001	32300000	260999	47
Deletion	Chr1	34930694	34930695	1
Deletion	Chr1	36094284	36094285	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	15750005	15750005	1
Insertion	Chr1	34121347	34121354	8
Insertion	Chr11	5493917	5493918	2
Insertion	Chr2	34444415	34444418	4
Insertion	Chr8	12722223	12722273	51

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	17143591	17752842	LOC_Os03g30060
Inversion	Chr3	17160142	17752830	LOC_Os03g30084

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1583956	Chr4	50615	2
Translocation	Chr9	6773266	Chr8	14543851	2
Translocation	Chr3	17277791	Chr2	16784778	2

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