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| Mutant Information |
|---|
| Mutant Name | FN3309-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3309-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14561965 | G-A | HET | ||
| SBS | Chr1 | 1571643 | A-T | HET | ||
| SBS | Chr1 | 16543500 | C-A | HET | ||
| SBS | Chr1 | 25240615 | A-G | Homo | ||
| SBS | Chr1 | 28554953 | G-A | HET | ||
| SBS | Chr1 | 9891071 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g17214 |
| SBS | Chr10 | 10294928 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g20450 |
| SBS | Chr10 | 11022112 | C-T | HET | ||
| SBS | Chr10 | 5857231 | T-A | Homo | ||
| SBS | Chr10 | 6848204 | C-T | Homo | ||
| SBS | Chr11 | 1143884 | G-T | HET | ||
| SBS | Chr11 | 19262589 | T-C | Homo | ||
| SBS | Chr12 | 10101278 | G-T | HET | ||
| SBS | Chr12 | 12884598 | C-A | HET | ||
| SBS | Chr12 | 15404140 | G-A | HET | ||
| SBS | Chr12 | 16828677 | G-A | HET | STOP_GAINED | LOC_Os12g28470 |
| SBS | Chr12 | 1955703 | G-A | HET | ||
| SBS | Chr12 | 22320519 | C-T | Homo | ||
| SBS | Chr12 | 24718435 | G-A | Homo | ||
| SBS | Chr3 | 26961320 | G-A | HET | ||
| SBS | Chr3 | 9793682 | C-G | Homo | ||
| SBS | Chr4 | 20400553 | T-G | HET | ||
| SBS | Chr4 | 7069808 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g12780 |
| SBS | Chr4 | 8103381 | T-G | HET | ||
| SBS | Chr5 | 3016699 | T-A | HET | ||
| SBS | Chr6 | 6900333 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g12640 |
| SBS | Chr7 | 16920230 | C-T | HET | ||
| SBS | Chr7 | 27416030 | T-A | HET | STOP_GAINED | LOC_Os07g45940 |
| SBS | Chr7 | 6903550 | C-T | HET | ||
| SBS | Chr8 | 15642820 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g25710 |
| SBS | Chr8 | 17755773 | A-G | HET | ||
| SBS | Chr8 | 24503083 | C-T | Homo | ||
| SBS | Chr9 | 20793607 | A-T | HET | ||
| SBS | Chr9 | 3304410 | C-A | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 11712240 | 11712250 | 10 | |
| Deletion | Chr5 | 16178615 | 16178616 | 1 | |
| Deletion | Chr9 | 17665739 | 17665740 | 1 | |
| Deletion | Chr2 | 19038667 | 19038669 | 2 | LOC_Os02g32230 |
| Deletion | Chr11 | 20812700 | 20812733 | 33 | |
| Deletion | Chr7 | 22149468 | 22149489 | 21 | |
| Deletion | Chr7 | 22733622 | 22733649 | 27 | |
| Deletion | Chr5 | 23531013 | 23531014 | 1 | |
| Deletion | Chr5 | 24490594 | 24490605 | 11 | |
| Deletion | Chr6 | 27106801 | 27106823 | 22 | |
| Deletion | Chr1 | 39495395 | 39495429 | 34 | LOC_Os01g67970 |
| Deletion | Chr1 | 40459214 | 40459215 | 1 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 10023519 | 10023520 | 2 | |
| Insertion | Chr10 | 21538522 | 21538523 | 2 | |
| Insertion | Chr2 | 35735831 | 35735831 | 1 | LOC_Os02g58430 |
| Insertion | Chr2 | 911218 | 911222 | 5 | |
| Insertion | Chr4 | 1058037 | 1058037 | 1 | |
| Insertion | Chr4 | 3903077 | 3903077 | 1 | |
| Insertion | Chr9 | 20759267 | 20759268 | 2 |
No Inversion
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 9879196 | Chr10 | 327474 | |
| Translocation | Chr11 | 19879091 | Chr3 | 1946808 | 2 |
| Translocation | Chr6 | 23874370 | Chr2 | 18547222 | 2 |